RnoEX6004595 @ rn6
Exon Skipping
Gene
ENSRNOG00000042084 | Acsm2
Description
acyl-CoA synthetase medium-chain family member 2 [Source:RGD Symbol;Acc:708383]
Coordinates
chr1:189369320-189374837:+
Coord C1 exon
chr1:189369320-189369530
Coord A exon
chr1:189373083-189373290
Coord C2 exon
chr1:189374697-189374837
Length
208 bp
Sequences
Splice sites
3' ss Seq
CCATCCTTTCTCACCCCCAGGAG
3' ss Score
10.9
5' ss Seq
TAGGTGAGT
5' ss Score
8.83
Exon sequences
Seq C1 exon
GAGGGCAAGAGAGGACCAGGTCCAGCCTTATGGTGGGTGAATGACCAAGGAGATGAAATAAAGTGGAGCTTCAGGGAGCTGAGGGACCTCAGCCGCCGTGCTGCCAACGTCTTTGAGCAGACTTGTGGCCTGCAGCATGGAGATCGCCTGGCCTTGATTCTGCCTCGAGTGCCGGAGTGGTGGCTGGTGACAGTGGGCTGCATTCGAACAG
Seq A exon
GAGTCATCTTCATTCCTGGGACTGCCCAAATGAAAGCCAAGGATATTCTCTACCGAATACAAATGTCTCAAGCCAAAGCCATTGTGACCACAGACAGCCTTGTTCCAGAGGTGGAATCTGTGGCTTCTGAGTGTCCTGGTCTGAAAACCAAGATAGTGGTGTCTGATCACAACCATGAAGGGTGGCTTAACTTCCGGACACTGCTTAG
Seq C2 exon
ATCAGCATCCCCAGACCATACCTGTGTTAAGTCAAAGATGAAGGACCCCATGGTCATCTTCTTCACCAGCGGGACCACAGGTTACCCCAAGATGGCAAAGCACAACCAAGGACTTGCTTTCCGGTCTTCTGTGCCTTCATG
VastDB Features
Vast-tools module Information
Secondary ID
ENSRNOG00000042084-'31-29,'31-28,32-29=AN
Average complexity
A_S
Mappability confidence:
100%=100=100%
Protein Impact
ORF disruption upon sequence exclusion
No structure available
Features
Disorder rate (Iupred):
C1=0.000 A=0.000 C2=0.000
Domain overlap (PFAM):
C1:
PF0050123=AMP-binding=FE(16.9=100)
A:
PF0050123=AMP-binding=FE(16.7=100)
C2:
PF0050123=AMP-binding=FE(11.4=100)
Main Skipping Isoform:
NA
Other Skipping Isoforms:
NA
Associated events
Conservation
Fruitfly
(dm6)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
AAAGTGGAGCTTCAGGGAGCT
R:
CATGAAGGCACAGAAGACCGG
Band lengths:
293-501
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]