HsaEX1002522 @ hg38
Exon Skipping
Gene
ENSG00000005187 | ACSM3
Description
acyl-CoA synthetase medium-chain family member 3 [Source:HGNC Symbol;Acc:HGNC:10522]
Coordinates
chr16:20679158-20750003:+
Coord C1 exon
chr16:20679158-20679449
Coord A exon
chr16:20718350-20718493
Coord C2 exon
chr16:20749910-20750003
Length
144 bp
Sequences
Splice sites
3' ss Seq
GGTCCATCCATATTTTGCAGATC
3' ss Score
8.65
5' ss Seq
AAGGTAGGG
5' ss Score
8.76
Exon sequences
Seq C1 exon
TTGCAGGTGTCACACCTTGGATTCACCATAGCTGGCTGAAACTAGCAGCAGCAGTGACTCCCGACTATGACCAGTGGATTAACCAACAAGACCCTGATTGCCCCACCCGAATAGACCTACGGCGAATCCCAACCACCAGTAAGAAGGACAACTGCCCTGCTCTGACCACACTGGAGGCTGGTCAGTCTACACATGGCTGAAGCTTGAAGATCTTGCAAGCTCTGCTCTAGTCACATCCTGGAAGCTGACTAGTCTACACACAGCCGAAGCTAAGAGGACCATCTCTAGATAA
Seq A exon
ATCCGCCTCTGAAGAGCACAGCTGTGTGGAAACAGGAAGTCAAGAACCAGTGGCCATTTATTTCACCAGTGGGACGACAGGCTCTCCTAAGATGGCCCAGCACTCTCAGAGCAGCTTCAGCATTGGGTTCACCGTCTGTGGAAG
Seq C2 exon
GTGTCAGAGCCAGAGGAGAAGAGTGGACAACCCAACTGCCCACCACAGGTCCCTAGAAGTACAGGTCAAGCCTATGCTGGGGAGAGGCAAACAG
VastDB Features
Vast-tools module Information
Secondary ID
ENSG00000005187_MULTIEX1-1/5=C1-3
Average complexity
C2
Mappability confidence:
100%=100=100%
Protein Impact
5' UTR
No structure available
Features
Disorder rate (Iupred):
C1=NA A=NA C2=NA
Domain overlap (PFAM):
C1:
NA
A:
NA
C2:
NA
Main Inclusion Isoform:
NA
Main Skipping Isoform:
NA
Other Inclusion Isoforms:
NA
Other Skipping Isoforms:
NA
Associated events
Conservation
Fruitfly
(dm6)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
GATTGCCCCACCCGAATAGAC
R:
ACTTCTAGGGACCTGTGGTGG
Band lengths:
257-401
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]
SPECIAL DATASETS
- Autistic and control brains