HsaINT1044238 @ hg38
Intron Retention
Gene
ENSG00000066654 | THUMPD1
Description
THUMP domain containing 1 [Source:HGNC Symbol;Acc:HGNC:23807]
Coordinates
chr16:20733664-20737286:-
Coord C1 exon
chr16:20736860-20737286
Coord A exon
chr16:20736359-20736859
Coord C2 exon
chr16:20733664-20736358
Length
501 bp
Sequences
Splice sites
5' ss Seq
GAGGTGGGT
5' ss Score
7.07
3' ss Seq
AACATTTGTGTGTAATATAGCTG
3' ss Score
5.5
Exon sequences
Seq C1 exon
GAATAGTGTGCACCCTCAATTCAGAAAATAAAGTGGATCTCACCAATCCACAGTACACAGTGGTAGTAGAAATCATCAAAGCTGTCTGTTGCCTGAGTGTTGTGAAAGATTACATGTTGTTTAGAAAATACAATCTCCAGGAGGTGGTGAAGAGCCCTAAGGATCCGTCACAGCTTAACTCAAAGCAGGGAAATGGGAAAGAAGCTAAACTGGAATCTGCGGACAAATCAGACCAAAACAACACAGCAGAAGGAAAAAATAACCAGCAGGTACCAGAGAATACTGAGGAGCTGGGGCAGACAAAACCAACGTCTAATCCACAGGTGGTAAATGAGGGAGGAGCCAAACCTGAACTTGCAAGTCAAGCCACAGAAGGATCCAAGTCAAATGAAAATGACTTCTCATAGGAAGTCATTTGGTGTTGGAG
Seq A exon
GTGGGTTTCTCACCTGGGGCTCTACGAGATGTTGCTGGGGCTCCACCTTAAATTGTGACTAAAAACAGTTTTTTATTTGTGTGCTGCATTATGCTGTTCTCACAGTAGTGAGCAATGATTGCGCAGCCCTGTTAACAGTTTTTTTAGGGATCTTTCAGCCTTTATGGTATTACGTAGAGGCAGACCCATGTGCTGCTGTTGCAAAGAGGGGAGGATAGGAGGGGGATGTTGGCCTCTCCCAGGCTCCTCTTCTGCAGTGCCAGCTGACTTAAGGGAGTGAACTACCTGTGAAGTAGAAAATCAGAGGGAAGTTTTCATTCTAAGGAAGGAGTTTTTACATGCCACAGCTCAGCTGTCTGCCTGCCACTTTGTTGTAAACATTGCAAAAATGTGGATCATGTAGGTTAGAAGTGAATTGTTTAGTGAAGTTTTTGTACTTTTGTGATTTTCTTGTTTATGTCTGTTTTTTTTTTTTTTTTTTAACATTTGTGTGTAATATAG
Seq C2 exon
CTGACAGTCCAGTGTCGCAATTTTGGAAGGCAAGATGTGAGAGAGACGAGAACCATTTTAGGCATAGAACTACAGACATTTCTGAAAAGGTTGGTGATGAAGAACTTCAGTCTTCTGAGTATACTTCAGTATACTAGTGCAACAAGGGACACAAAGAAATTCTGTCTTAATAAAGAAAGCTACTTCTCAAGGGTATTATGTGGACTCAGTCCAAGCTCTCCTGTCCCATTGTGCATTGTCTGTGACATGCAACTTACAAAACTAGCAATTGTAACAATAAATCACAGCCACTTGACAAGAAAGGATATTCATTATTTTCAAATGGCTTTTGGACTATCAAAAACAGTAAGGCTTTTGTTCAGAAATCACCTTTAGTCAAAAGGTTTAAGAAGCAAATTATTTAGTAGCAGAACTTATCTCAGGAAAGGAAAATATGCATGGTTGGTGAGAATCTAATAACATTAAAATGCTGGGGCAAGATGCAGTACAAAGTTGAAGAGACTTTATTCTCAATAAGTTGATTTACTGATGATATGTCATATGATGCAAAAAAGGTTTTGTGTCATTAACTGAAAAGTAGCAGCTTCTCTATCCAGGATGATGAGTCAACAGGTTTCACTAATATTTGTCATGCTGTAGCATTTGTAAGATTTGTAAATGATGAAATTCAAAGAAAACTTTTTCTATTGCTAGGAGCCTGCCAGAACAAAGGCCAATATATAATGTTGTGACATCATATCTGATAACCAGAGGTCTGGTATCTACACTCCTGGTGCCCCATCAGTGGTTGTCTCCATAAGTCATTTTGCGTTATTAAAAAAAAAAAAAGAAATCCTGATGTTGACATTATAGCACACTGCTTTCTCCACAGAGATGCTGATATCAAAAACTTGAAGATACAGTGAAGTTCTGAATAATGTTACAAAACTGGTTACCTGTATCAAAGACCCATTTATGCAAAAATGTTAAAAAAAAAAAAAAACACCCAAAACAAAAACCTGGACAGACAGCACATAAACCTCCTGCACCATACAGACATCCAGTGGCTTCTCAGAGGAAGCGTTCTCTACAGGATATTTGAATTGAAAGGTGAATTGCCAGAGTACTTACAATAAAACAGCCAGCTTTTGCTGAGTGCTTTGGAAATGAAAAATGACTACAGAAAGTAGCCTATTTTGCAGACGTTTTTCATCACATGAACAAATGGACAAGTCTCTGAAAGGTTCTGGGGAAAAAAATTTTTCTTAAAGCGACAAGACTCTTAGATCTAAAAGGAAACTGACTTGCCACCTTGCCAGAGGAATTCTTGAAATGTTTCTGCAGCCACTTGGCCTTGAAAATAAAGGGTGCAACTCTCAAATCTTGTTCTAACCCGGCTGGAGGAACCACAAGACCCAATGAAATAGCATTTTCTCTCCTTTTCCCAGCACTAGTATATAACCTATGAGGAACCCTTGTCTCTGAATCTGCTCAGCTTGAAATTTTGTCTCTGAAGGAAGAGAATGAACTCAGCCCTAGTCTGACAGTCCTAGATTTCTGTGAAATAAGAGTATTCTTCAACTTAGTGCTCACACTCACATACCATGAGGGTTCTCTGCAGGGGTTTAGGGGTTTCCTGAATTTGAAAGTTTTTTCAAGGCCTCTTTTTGGGTAAAACAATTGAAAAGGCAGACACCAACAAAGTCTGCAAAATTAACTGTCCAGATTAAGAATATTAAGGAGCTGTAAAATTAGCTTGTAGAAATGGACTTATCCTTAAGTTTTAAAAAGTTAGGAAATCCTAAAAATGTTAGGCTTCCTGCACAAGTGGCTATGTTCATTTAATGGCTAGTGAACATGGGAATGTATTTTTATCCTCCTAGCTGGTGGTTCTGTTTGGTAAACCAGACTAGAATGATTTGAGAGGGGCAAAGAGAATAGGCAGGACCTTCCTTCTATAGCTTTACATATTTAGAATGTTAATACTTAATGACATTGAAGTTACCTTGCAATGATTGATAAGAGGATTATTAATATCAGTTAGGGGAATAGGGAGGATAGGATTTTGGTGCCTTCTTCAGCAGACTTGCTCCAAGACAAAGATTCTATTTTGATAGTGCAAGACAAAAGGACTCGGAAGAAAATTGGCCATATGCCTACAGAGCATACAACTCTGTGGAACTAAATTGTTTTTACTTTGTGAAAGCTGCTATTTTACGGAAAGATTTTGATTATACAGTTTGTTTTTAAATTGTCTTTTATATTTATTTGTATTTGGTAAGAATCGGTTGTTACACAAGCTGTTCTTTCCCAGTTACAAAATCCTGTGTTCGGTTGTAACCTGAACTCATTAAAAGACTTGTTTTCAGGTTTATCAACTGTTTATTTTCACTGACATTTGAGCATGTTATTTTATAAATGACGGGATTCCAGGGTAGGAAGTGCTTTTTATTCCCCTTTTGTTTTTTCTTTTAAAAAATTACGTCAGTTAAAAAAATAAAAAAACTGCAGTCTTATGGTTTAGAAAACTTGTTTAGCTCCATAGAGGAAAGAATGTTAAACTTTGTATTTTAAAACATGATTCTCTGAGGTTAAACTTGGTTTTCAAATGTTATTTTTACTTGTATTTTGCTTTTGGTACGGCCAGAAATCGAGCTTGTTTTTTCATAGTTCCTGATATTTTCAGAAAAATCAAAATAAATTTGTTCCCTAAAAA
VastDB Features
Vast-tools module Information
Secondary ID
ENSG00000066654:ENST00000381337:4
Average complexity
IR
Mappability confidence:
NA
Protein Impact
3' UTR
No structure available
Features
Disorder rate (Iupred):
C1=0.622 A=NA C2=NA
Domain overlap (PFAM):
C1:
PF0292612=THUMP=PD(24.3=25.7)
A:
NA
C2:
NA
Main Inclusion Isoform:
NA
Main Skipping Isoform:
NA
Other Inclusion Isoforms:
NA
Associated events
Conservation
Mouse
(mm9)
No conservation detected
Cow
(bosTau6)
No conservation detected
Chicken
(galGal4)
No conservation detected
Chicken
(galGal3)
No conservation detected
Zebrafish
(danRer10)
No conservation detected
Fruitfly
(dm6)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
GGGCAGACAAAACCAACGTCT
R:
ACAGGAGAGCTTGGACTGAGT
Band lengths:
358-859
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]
SPECIAL DATASETS
- Autistic and control brains