Special

HsaALTA1004601-2/2 @ hg38

Alternative 3'ss

Gene
ENSG00000066654 | THUMPD1
Description
THUMP domain containing 1 [Source:HGNC Symbol;Acc:HGNC:23807]
Coordinates
chr16:20735375-20737286:-
Coord C1 exon
chr16:20736860-20737286
Coord A exon
chr16:20735488-20735665
Coord C2 exon
chr16:20735375-20735487
Length
178 bp
Sequences
Splice sites
5' ss Seq
GAGGTGGGT
5' ss Score
7.07
3' ss Seq
AAAACTTTTTCTATTGCTAGGAG
3' ss Score
6.03
Exon sequences
Seq C1 exon
GAATAGTGTGCACCCTCAATTCAGAAAATAAAGTGGATCTCACCAATCCACAGTACACAGTGGTAGTAGAAATCATCAAAGCTGTCTGTTGCCTGAGTGTTGTGAAAGATTACATGTTGTTTAGAAAATACAATCTCCAGGAGGTGGTGAAGAGCCCTAAGGATCCGTCACAGCTTAACTCAAAGCAGGGAAATGGGAAAGAAGCTAAACTGGAATCTGCGGACAAATCAGACCAAAACAACACAGCAGAAGGAAAAAATAACCAGCAGGTACCAGAGAATACTGAGGAGCTGGGGCAGACAAAACCAACGTCTAATCCACAGGTGGTAAATGAGGGAGGAGCCAAACCTGAACTTGCAAGTCAAGCCACAGAAGGATCCAAGTCAAATGAAAATGACTTCTCATAGGAAGTCATTTGGTGTTGGAG
Seq A exon
GAGCCTGCCAGAACAAAGGCCAATATATAATGTTGTGACATCATATCTGATAACCAGAGGTCTGGTATCTACACTCCTGGTGCCCCATCAGTGGTTGTCTCCATAAGTCATTTTGCGTTATTAAAAAAAAAAAAAGAAATCCTGATGTTGACATTATAGCACACTGCTTTCTCCACAG
Seq C2 exon
AGATGCTGATATCAAAAACTTGAAGATACAGTGAAGTTCTGAATAATGTTACAAAACTGGTTACCTGTATCAAAGACCCATTTATGCAAAAATGTTAAAAAAAAAAAAAAACA
VastDB Features
Vast-tools module Information
Secondary ID
ENSG00000066654-12-14,12-13-2/2
Average complexity
Alt3
Mappability confidence:
NA
Protein Impact

In the CDS, with uncertain impact

No structure available
Features
Disorder rate (Iupred):
  C1=0.622 A=NA C2=NA
Domain overlap (PFAM):

C1:
PF0292612=THUMP=PD(24.3=25.7)
A:
NA
C2:
NA


Main Inclusion Isoform:
NA


Main Skipping Isoform:
NA


Other Inclusion Isoforms:
NA


Other Skipping Isoforms:
NA
Conservation
Mouse
(mm10)
No conservation detected
Mouse
(mm9)
No conservation detected
Rat
(rn6)
No conservation detected
Cow
(bosTau6)
No conservation detected
Chicken
(galGal4)
No conservation detected
Chicken
(galGal3)
No conservation detected
Zebrafish
(danRer10)
No conservation detected
Fruitfly
(dm6)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
CCAGCAGGTACCAGAGAATACTG
R:
TGGGTCTTTGATACAGGTAACCA
Band lengths:
245-423
Functional annotations
There are 0 annotated functions for this event


GENOMIC CONTEXT[edit]

INCLUSION PATTERN[edit]


SPECIAL DATASETS

  • Autistic and control brains