HsaEX1002521 @ hg38
Exon Skipping
Gene
ENSG00000005187 | ACSM3
Description
acyl-CoA synthetase medium-chain family member 3 [Source:HGNC Symbol;Acc:HGNC:10522]
Coordinates
chr16:20729453-20749368:+
Coord C1 exon
chr16:20729453-20729553
Coord A exon
chr16:20731620-20731739
Coord C2 exon
chr16:20749265-20749368
Length
120 bp
Sequences
Splice sites
3' ss Seq
AGATAAATTATCTGTTGCAGGTG
3' ss Score
7.08
5' ss Seq
AAAGTAAGT
5' ss Score
9.72
Exon sequences
Seq C1 exon
GGTACCGTATTGGGCCATTTGAAGTGGAGAGTGTGCTTGCTGAGCATCCAGCAGTTGTCAAATCAGCTGTTGTCAGTAGTCCATATCCAATTTGTGGAGAG
Seq A exon
GTGGTGAAAGCTTTTGTTGTCTTAGCTCCATCCTGTAAGTCCTACAGCCTAGAGAAATTAACTCTTGAGCTTCAGGATCATGTGAAAAAAATCAACTGCACCTTACAAATATCCAAGAAA
Seq C2 exon
CCCAAAGATAAGAATGAAGAGACACTAAACCTCTGATTTTTGCATTCTAAAGAGAATTGTCAACAAGGACTAAGTGAAGCATCTCTCTCCAGGTTTGTGAAAAG
VastDB Features
Vast-tools module Information
Secondary ID
ENSG00000005187-'14-13,'14-12,15-13
Average complexity
C3
Mappability confidence:
100%=100=100%
Protein Impact
5' UTR
No structure available
Features
Disorder rate (Iupred):
C1=NA A=NA C2=NA
Domain overlap (PFAM):
C1:
NA
A:
NA
C2:
NA
Main Inclusion Isoform:
NA
Main Skipping Isoform:
NA
Other Inclusion Isoforms:
NA
Other Skipping Isoforms:
NA
Associated events
Conservation
Fruitfly
(dm6)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
GGTACCGTATTGGGCCATTTGA
R:
TTCACAAACCTGGAGAGAGATGC
Band lengths:
202-322
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]
SPECIAL DATASETS
- Autistic and control brains