HsaEX1040754 @ hg38
Exon Skipping
Gene
ENSG00000066654 | THUMPD1
Description
THUMP domain containing 1 [Source:HGNC Symbol;Acc:HGNC:23807]
Coordinates
chr16:20721142-20731584:-
Coord C1 exon
chr16:20731440-20731584
Coord A exon
chr16:20730589-20730681
Coord C2 exon
chr16:20721142-20721253
Length
93 bp
Sequences
Splice sites
3' ss Seq
TGGTTACTTCTGCTCTTCAGCTG
3' ss Score
5.82
5' ss Seq
GAGGTAAGA
5' ss Score
10.06
Exon sequences
Seq C1 exon
ACACATCAAGGATCTGCAACCAATGCTGAACATAGGTACTTACTGTTTGTTAATAGCAGTTTGAGTGATGACTGCAAATGCCAGAGATTGCTTCTGAACAAAGCTTGGATACAATTACAAAGTGAGGTTTTGAGAATAATTCCAG
Seq A exon
CTGAAATCATTTATATTGAGAGGATGAGAACATGGCAGCAGGAGGAAACTATTTCTGAGAATGGAATAAATGGGAGTGGAGGGGGTATAAGAG
Seq C2 exon
GTCCATCATCCATAGCCTCAATGATGAACAAGACATCCGAAAAATAGGAGGATTATTCAAGCCTCGCCCCTCACTTCCTCCTCCCTTGTGATCGGCAATCTCGCACTTACAG
VastDB Features
Vast-tools module Information
Secondary ID
ENSG00000066654_MULTIEX1-8/9=7-9
Average complexity
C2
Mappability confidence:
100%=100=100%
Protein Impact
3' UTR
No structure available
Features
Disorder rate (Iupred):
C1=NA A=NA C2=NA
Domain overlap (PFAM):
C1:
NA
A:
NA
C2:
NA
Main Inclusion Isoform:
NA
Main Skipping Isoform:
NA
Other Inclusion Isoforms:
NA
Other Skipping Isoforms:
NA
Associated events
Conservation
Mouse
(mm9)
No conservation detected
Cow
(bosTau6)
No conservation detected
Chicken
(galGal4)
No conservation detected
Chicken
(galGal3)
No conservation detected
Zebrafish
(danRer10)
No conservation detected
Fruitfly
(dm6)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
ACTGCAAATGCCAGAGATTGCT
R:
GATTGCCGATCACAAGGGAGG
Band lengths:
175-268
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]
SPECIAL DATASETS
- Autistic and control brains