BtaEX6108964 @ bosTau6
Exon Skipping
Gene
ENSBTAG00000046098 | ACSM4
Description
acyl-CoA synthetase medium-chain family member 4 [Source:HGNC Symbol;Acc:HGNC:32016]
Coordinates
chr25:18557840-18562175:+
Coord C1 exon
chr25:18557840-18557939
Coord A exon
chr25:18560810-18560929
Coord C2 exon
chr25:18562089-18562175
Length
120 bp
Sequences
Splice sites
3' ss Seq
TGATTTTTTTCCCCCTACAGGTA
3' ss Score
12.69
5' ss Seq
AAGGCAAGT
5' ss Score
3.24
Exon sequences
Seq C1 exon
GTACCGTATTGGGCCATTTGAAGTGGAGAGTGCACTAATTGAGCACCCAGCAGTCGTTGAATCAGCTGTTGTCAGCAGTCCAGATCCAGTCAGAGGAGAG
Seq A exon
GTAGTGAAAGCTTTTGTTGTTTTATCTGCACCCTTTAAATCATCCAACCCAGAGAAATTAACTCTTGAACTTCAGGATCATGTAAAAAAATCAACTGCACCTTACAAGTATCCAAGAAAG
Seq C2 exon
GTGGAATTTGTTAAAGAACTCCCAAAGACAATCACTGGGAAAATCAAACGCAACGTTTTAAGAGACCATGAATGGGGTCGAACATAG
VastDB Features
Vast-tools module Information
Secondary ID
ENSBTAG00000046098-'10-11,'10-10,11-11=AN
Average complexity
A_S
Mappability confidence:
100%=100=100%
Protein Impact
Alternative protein isoforms (Ref)
No structure available
Features
Disorder rate (Iupred):
C1=0.000 A=0.050 C2=0.000
Domain overlap (PFAM):
C1:
PF131931=AMP-binding_C=PU(32.1=76.5)
A:
PF131931=AMP-binding_C=FE(48.1=100)
C2:
PF131931=AMP-binding_C=PD(16.0=44.8)
Main Skipping Isoform:
NA
Other Inclusion Isoforms:
NA
Other Skipping Isoforms:
NA
Associated events
Conservation
Rat
(rn6)
No conservation detected
Fruitfly
(dm6)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
GTACCGTATTGGGCCATTTGA
R:
TATGTTCGACCCCATTCATGGT
Band lengths:
186-306
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]