GgaEX1003813 @ galGal4
Exon Skipping
Description
NA
Coordinates
chr14:14473240-14489759:-
Coord C1 exon
chr14:14489547-14489759
Coord A exon
chr14:14481071-14481190
Coord C2 exon
chr14:14473240-14473447
Length
120 bp
Sequences
Splice sites
3' ss Seq
CTTTCACTTTTGTGGCACAGGTA
3' ss Score
7.54
5' ss Seq
AAGGTAAGT
5' ss Score
11
Exon sequences
Seq C1 exon
AGGATGGAAGGCGACCCGTAAATCCAGCTTTTTGGTGGGTGAATGATGAAGGGGAGGAGGTGAAGTGGAGCTTTGAAGAGTTGGGATTTCTGTCCAGGAAAACAGCTAACATACTGTCTGAGGCATGTGGTTTGCAGAGAGGTGATAGAGTTCTGGCAGTTCTGCCTCGTGTCCCTGAATGGTGGCTACTGAGTATAGCCTGCATCCGGGCAG
Seq A exon
GTAGTCAAAGCCTTCGTTGTTTTGGCTCCTGCTTTTGCATCACACGACCCAGAAAAACTAACTCATGATCTTCAGCAACATGTCAAAAAGGTGACTGCTCCTTACAAGTACCCCAGAAAG
Seq C2 exon
GAATTGTCTTAATTCCAGGAACATCCCAATTATCAGCCAAAGACATATTATATCGACTCCAGGCTTCGAAGGCCAAGTGCATCATTACCAACGACACTCTGGCTCCTGCAGTAGACTCAGTGGCATCTGAGTGCCAGTTTCTTAAAAACAAGCTGATGGTGTCCAAAGGCAGTAGGGAGGGATGGCTGAACTTCAATGAACTGTACAA
VastDB Features
Vast-tools module Information
Secondary ID
ENSGALG00000018875_MULTIEX1-10/24=C1-15
Average complexity
C3
Mappability confidence:
100%=100=100%
Protein Impact
ORF disruption upon sequence inclusion
No structure available
Features
Disorder rate (Iupred):
C1=NA A=NA C2=0.000
Domain overlap (PFAM):
C1:
NA
A:
NA
C2:
PF0050123=AMP-binding=FE(16.7=100)
Main Inclusion Isoform:
NA
Other Inclusion Isoforms:
NA
Other Skipping Isoforms:
NA
Associated events
Other assemblies
Conservation
Fruitfly
(dm6)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
TGAAGGGGAGGAGGTGAAGTG
R:
TGATGCACTTGGCCTTCGAAG
Band lengths:
251-371
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]