BtaEX6108946 @ bosTau6
Exon Skipping
Gene
ENSBTAG00000037449 | ACSM5
Description
acyl-CoA synthetase medium-chain family member 5 [Source:HGNC Symbol;Acc:HGNC:26060]
Coordinates
chr25:18231424-18234451:+
Coord C1 exon
chr25:18231424-18231523
Coord A exon
chr25:18233841-18233960
Coord C2 exon
chr25:18234371-18234451
Length
120 bp
Sequences
Splice sites
3' ss Seq
GGTTTTGGTTTTTTCAACAGGTG
3' ss Score
9.89
5' ss Seq
AAGGTAAAC
5' ss Score
8.14
Exon sequences
Seq C1 exon
CTACCGGATCGGGCCTGTTGAGGTGGAGAGTGCACTTGCTGAGCACCCAGCTGTCCTGGAGTCTGCTGTGGTCAGCAGCCCGGACCCCATTAGAGGGGAG
Seq A exon
GTGGTAAAGGCATTTATAGTTCTTTCTCCAGCCTATTCCTCGCATGACCCAGAGAAACTAACCCAAGAACTCCAGGAGCATGTGAAAAGGGTGACTGCTCCATACAAGTACCCCAGGAAG
Seq C2 exon
ATGGCCTTCGTTTCCGAACTTCCAAAGACGGTTTCTGGAAAGATTCAAAGGAGTAAATTGAGAAGTCAAGAGTGGAAAAAT
VastDB Features
Vast-tools module Information
Secondary ID
ENSBTAG00000037449-'18-22,'18-21,20-22=AN
Average complexity
A_S
Mappability confidence:
100%=100=100%
Protein Impact
Alternative protein isoforms (Ref)
No structure available
Features
Disorder rate (Iupred):
C1=0.000 A=0.225 C2=0.074
Domain overlap (PFAM):
C1:
PF131931=AMP-binding_C=PU(32.1=76.5)
A:
PF131931=AMP-binding_C=FE(48.1=100)
C2:
PF131931=AMP-binding_C=PD(16.0=48.1)
Main Skipping Isoform:
NA
Other Inclusion Isoforms:
NA
Other Skipping Isoforms:
NA
Associated events
Conservation
Fruitfly
(dm6)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
CCGGATCGGGCCTGTTGAG
R:
ATTTTTCCACTCTTGACTTCTCAAT
Band lengths:
178-298
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]