Special

MmuEX6013563 @ mm9

Exon Skipping

Gene
ENSMUSG00000030972 | Acsm5
Description
acyl-CoA synthetase medium-chain family member 5 [Source:MGI Symbol;Acc:MGI:2444086]
Coordinates
chr7:126684325-126687307:+
Coord C1 exon
chr7:126684325-126684424
Coord A exon
chr7:126685831-126685950
Coord C2 exon
chr7:126686229-126687307
Length
120 bp
Sequences
Splice sites
3' ss Seq
CTGAGGTTCTCTCCCTGCAGGTG
3' ss Score
11.48
5' ss Seq
AAGGTAAAC
5' ss Score
8.14
Exon sequences
Seq C1 exon
CTACCGGATTGGTCCTGTTGAAGTAGAGAGTGCACTTGCTGAGCATCCAGCTGTCCTGGAGTCTGCTGTGGTCAGCAGCCCAGACCCCATCCGGGGAGAG
Seq A exon
GTGGTAAAGGCATTTATAGTCCTTTCTCCAGCCTATGCATCTCATGACCCAGAAGCCCTGACCAGGGAACTCCAGGAGCATGTGAAGACAGTGACTGCTCCATACAAGTACCCCAGGAAG
Seq C2 exon
GTGGCTTTTATTTCAGAACTGCCAAAGACGGTTTCTGGAAAGATCCTAAGGAGTAAATTGAGAAACCAAGAGTGGGGGAGATGAAATGCAACCCAAGAGAGATGCTGCGATGCACTGAAGGTTCTGAAGGAGAAGGAAGTGGGGCAGGCCAGCTCCTCCTTGGAGTACTATCCCTTCAAAGAATAGATATCAAAGATGGTCAGCTTTCAAATGGGCATTTTGGGATAATGCTGGAAAATGTAAGAGCATCCCTGGTCCAGAGCTCACATACACTGCCCAGTCCAGCAAATGCCCTACAGCTTAATTTCCCTCTCTGAAGACATCCTCAGCATTGCTTTTACCAAGAGAACTCTGTTTTCCTGGGACAGACAAATCGGCACAGCCTTAGGGCATCCTTGGTCTCATTATGCCAGTGGGAATGAATGTGACCCTTTGGATGAAGTCATTTGGCAACAGCATCTGGGACATAACATTGACTGTCATACCCTTCCATTTAGACA
VastDB Features
Vast-tools module Information
Secondary ID
ENSMUSG00000030972-'11-12,'11-11,12-12=AN
Average complexity
A_S
Mappability confidence:
100%=100=100%
Protein Impact





	

	
Alternative protein isoforms (Ref)





No structure available

		

			
Features


			

				
Disorder rate (Iupred):
  C1=0.000 A=0.100 C2=0.037
 
                        

				
Domain overlap (PFAM):

					





						

							
C1:
PF131931=AMP-binding_C=PU(32.1=76.5)

							
A:
PF131931=AMP-binding_C=FE(48.1=100)

							
C2:
PF131931=AMP-binding_C=PD(16.0=46.4)

						

					

				








    
Main Inclusion Isoform:
ENSMUSP00000063416





     
                   









    
Main Skipping Isoform:
NA





     
      









    
Other Inclusion Isoforms:
NA
          









    
Other Skipping Isoforms:
NA
  



Associated events






Other assemblies


mm10




Conservation


Human
(hg38)
chr16:20439800-20439919 
HIGH PSI
HsaEX6042591
(ACSM5)
Human
(hg19)
chr16:20451122-20451241 
HIGH PSI
HsaEX6042591
(ACSM5)
Rat
(rn6)
chr1:189264553-189264672 
HIGH PSI
RnoEX6004585
(Acsm5)
Cow
(bosTau6)
chr25:18233841-18233960 
HIGH PSI
BtaEX6108946
(ACSM5)
Chicken
(galGal4)
chr14:14921726-14921845 
HIGH PSI
GgaEX1006067
(ACSM3)
Chicken
(galGal3)
chr14:15236001-15236120 
HIGH PSI
GgaEX1003813
([1])
Zebrafish
(danRer10)
chr2:44875163-44875282 
HIGH PSI
DreEX0010853
(acsm3)
Fruitfly
(dm6)
No conservation detected




Primers PCR

	

		

			
Suggestions for RT-PCR validation

			

				
F: 
CCGGATTGGTCCTGTTGAAGT

				
R: 
GCCCCACTTCCTTCTCCTTCA

				
Band lengths: 
242-362

			

		

	





	
Functional annotations
(Submit an annotation)

	


There are 0 annotated functions for this event 


		










GENOMIC CONTEXT[edit]












INCLUSION PATTERN[edit]










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