RnoEX6004585 @ rn6
Exon Skipping
Gene
ENSRNOG00000031211 | Acsm5
Description
acyl-CoA synthetase medium-chain family member 5 [Source:RGD Symbol;Acc:1309578]
Coordinates
chr1:189262672-189269747:+
Coord C1 exon
chr1:189262672-189262771
Coord A exon
chr1:189264553-189264672
Coord C2 exon
chr1:189269660-189269747
Length
120 bp
Sequences
Splice sites
3' ss Seq
CTGGGGTTCTCTCCCTGCAGGTG
3' ss Score
12.27
5' ss Seq
AAGGTAACC
5' ss Score
9.24
Exon sequences
Seq C1 exon
CTACCGGATTGGGCCTGTGGAAGTAGAGAGTGCACTGGCTGAGCATCCGGCTGTCCTGGAGTCTGCTGTGGTCAGCAGCCCAGACCCCATCCGGGGAGAG
Seq A exon
GTGGTAAAGGCGTTTATAGTCCTTTCTCCAGCCTATGTGTCTCATGACCCAGAAGCCCTGACCAGGGAACTCCAGGAGCATGTGAAGACAGTGACTGCTCCATACAAGTACCCCAGGAAG
Seq C2 exon
GACACCTGTCACTTCCTGCTACATGAGGGCATTTGGAAGCCCATGACCTACATTAATTTTATTACTTCTTTACAGATTTTGACTTTAA
VastDB Features
Vast-tools module Information
Secondary ID
ENSRNOG00000031211-'21-26,'21-23,23-26=AN
Average complexity
A_C3
Mappability confidence:
100%=100=100%
Protein Impact
Alternative protein isoforms (Ref)
No structure available
Features
Disorder rate (Iupred):
C1=0.000 A=0.025 C2=0.000
Domain overlap (PFAM):
C1:
PF131931=AMP-binding_C=PU(32.1=76.5)
A:
PF131931=AMP-binding_C=FE(48.1=100)
C2:
PF029949=Transposase_22=PU(0.5=3.3)
Main Skipping Isoform:
NA
Other Skipping Isoforms:
NA
Associated events
Conservation
Fruitfly
(dm6)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
CTACCGGATTGGGCCTGTGG
R:
ATAAAATTAATGTAGGTCATGGGCTT
Band lengths:
162-282
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]