DreEX0010853 @ danRer10
Exon Skipping
Gene
ENSDARG00000004880 | acsm3
Description
acyl-CoA synthetase medium-chain family member 3 [Source:ZFIN;Acc:ZDB-GENE-080220-22]
Coordinates
chr2:44872552-44876472:-
Coord C1 exon
chr2:44876373-44876472
Coord A exon
chr2:44875163-44875282
Coord C2 exon
chr2:44872552-44874472
Length
120 bp
Sequences
Splice sites
3' ss Seq
GAGTTTGCTTGATGTTTTAGGTG
3' ss Score
8.61
5' ss Seq
AAGGTAGAT
5' ss Score
7.24
Exon sequences
Seq C1 exon
GTACCGTATTGGTCCATTTGAGGTGGAAAATGCCCTGATAGAGCATCCAGCTGTAGCTGAATCAGCCGTAGTCAGCAGCCCTGATCCTGTTCGAGGAGAG
Seq A exon
GTGGTGAAGGCTTTTGTTGTGCTGACAGCAGATTTTAAATCAAGAGCCCATAAGGAACTGATCAAGGAACTGCAAACACATGTAAAGAGCATCACGGCTCCTTACAAATATCCACGCAAG
Seq C2 exon
ATTGAGTTTGTGGATCAGCTGCCCAAGACAGTAAGTGGGAAAATAAGACGAGTGGAGTTAAGAAAGAAGGAATGGGGACAGCAAACCAGCTAAATCTGGAACTGAGAAATCAAATGTAAAAATGGCATTCCACCTCTTCACATGCTACATTCACAAGTGTCTTCCCACATTTTTTAGAGATGCATGAAGAAGAGATTATTATGAAATGATTTTCAATATTTCAGCTCGCCAGCAGATGGCAGCACTTCATAATGTCTTCATTCAACATATGAACTCACCGGCCACTTTATTAGGTACTCCTTAGTAGGCTGGACCCTCTTTTGCCTTCAGAACTGCCTTAATCCTTTGTGGCATAGATTCAACAGGGTAATGGAAAATTCCTCATATTAGATTTTGACATGATAGCGTCACACAGTTGATGCAGATTGTTGGCTGCACATCCATGAAGCGTATCTCCCATTCCACCACATCCCAAAGATGCTCTATTGGATTGAGGGTCT
VastDB Features
Vast-tools module Information
Secondary ID
ENSDARG00000004880-'12-12,'12-11,13-12
Average complexity
S
Mappability confidence:
100%=100=100%
Protein Impact
Alternative protein isoforms (Ref)
No structure available
Features
Disorder rate (Iupred):
C1=0.000 A=0.000 C2=0.033
Domain overlap (PFAM):
C1:
PF131931=AMP-binding_C=PU(32.1=76.5)
A:
PF131931=AMP-binding_C=FE(48.1=100)
C2:
PF131931=AMP-binding_C=PD(16.0=41.9)
Main Skipping Isoform:
NA
Other Inclusion Isoforms:
NA
Other Skipping Isoforms:
NA
Associated events
Conservation
Fruitfly
(dm6)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
AGCCCTGATCCTGTTCGAGG
R:
TGCTGGCGAGCTGAAATATTGA
Band lengths:
258-378
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]