MmuEX6013606 @ mm10
Exon Skipping
Gene
ENSMUSG00000030935 | Acsm3
Description
acyl-CoA synthetase medium-chain family member 3 [Source:MGI Symbol;Acc:MGI:99538]
Coordinates
chr7:119780968-119784893:+
Coord C1 exon
chr7:119780968-119781067
Coord A exon
chr7:119783850-119783969
Coord C2 exon
chr7:119784274-119784893
Length
120 bp
Sequences
Splice sites
3' ss Seq
GTTCTACATGTCTTCTTTAGGTA
3' ss Score
9.53
5' ss Seq
AAGGTAGGC
5' ss Score
10.08
Exon sequences
Seq C1 exon
TTACCGAATTGGACCATTTGAGGTAGAAAGTGCCCTCATAGAACATCCTTCCATCGCAGAGTCAGCTGTTGTCAGCAGTCCAGACCCCATCAGAGGAGAG
Seq A exon
GTAGTAAAGGCTTTTATTGTCCTGAATCCTGATTACAAGTCCCATGATCAAGAGCAACTGAAAAAGGAGATCCAGGAGCACGTGAAGAAGACTACAGCGCCTTACAAATACCCCAGAAAG
Seq C2 exon
GTAGAATTTATTGAAGAGCTGCCGAAGACTGTCAGTGGGAAGGTCAAAAGAAATGAACTGAGGAAAAAGGAATGGGTAACAACTTGAACTCCTCCCACTAATCACCTGTGTAGCTATAAACACAGTGTCTACAAGTCTGCAGGAACCACAGATTATGTGGGCAGACTGCTTTGAAACTGGATTGAAAGTATTTTGTAGTTATGACATCAGAGCCTGAATTCTGAAATCAAATAATCATTATTGAATCCTTCTGCATTCATGTCAATGCTCCTGTAATCTGCCAACATAAAATGAATGTCGCCAGATGCTGAGATGTCTTAAAATTTATTTTAGGAGCAGATTCTAAACTAAATCTGTACCCAGGCATTTTCAAAACATAACTGAACAATTCTAATATGCTAATATACAAATCAGAACAAATCTTCAAACTTTGAAAAGAACCCTATTTTTAAGAAACTGTCATAATTCTTAGAATATTTACCTAAAACTTTACTAGTCAT
VastDB Features
Vast-tools module Information
Secondary ID
ENSMUSG00000030935-'26-30,'26-26,27-30
Average complexity
S
Mappability confidence:
100%=100=100%
Protein Impact
Alternative protein isoforms (Ref)
No structure available
Features
Disorder rate (Iupred):
C1=0.037 A=0.212 C2=0.007
Domain overlap (PFAM):
C1:
PF131931=AMP-binding_C=PU(32.1=76.5)
A:
PF131931=AMP-binding_C=FE(48.1=100)
C2:
PF131931=AMP-binding_C=PD(16.0=44.8)
Main Skipping Isoform:
NA
Other Inclusion Isoforms:
Other Skipping Isoforms:
NA
Associated events
Other assemblies
Conservation
Fruitfly
(dm6)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
ACCGAATTGGACCATTTGAGGT
R:
CTGTGGTTCCTGCAGACTTGT
Band lengths:
249-369
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]
SPECIAL DATASETS
- Ribosome-engaged transcriptomes of neuronal types
- Neural differentiation time course
- Muscular differentiation time course
- Spermatogenesis cell types
- Reprogramming of fibroblasts to iPSCs
- Hematopoietic precursors and cell types