HsaEX0002100 @ hg19
Exon Skipping
Gene
ENSG00000005187 | ACSM3
Description
acyl-CoA synthetase medium-chain family member 3 [Source:HGNC Symbol;Acc:10522]
Coordinates
chr16:20803558-20808903:+
Coord C1 exon
chr16:20803558-20803657
Coord A exon
chr16:20807692-20807811
Coord C2 exon
chr16:20808208-20808903
Length
120 bp
Sequences
Splice sites
3' ss Seq
GTTTCAAATATTTATTTTAGGTA
3' ss Score
8.53
5' ss Seq
AAGGTAGGC
5' ss Score
10.08
Exon sequences
Seq C1 exon
CTATCGAATTGGACCATTTGAGGTAGAAAATGCCCTGAATGAACACCCTTCAGTTGCAGAGTCAGCTGTTGTCAGCAGCCCAGACCCCATCAGAGGAGAG
Seq A exon
GTAGTAAAGGCTTTTGTCGTTCTAAATCCTGATTACAAGTCACATGATCAAGAACAACTAATAAAGGAGATTCAGGAGCATGTTAAAAAAACTACAGCACCTTACAAATATCCCAGAAAG
Seq C2 exon
GTAGAATTTATTCAAGAGCTGCCAAAGACTATCAGTGGGAAGACAAAAAGAAATGAACTGAGGAAGAAAGAATGGAAGACAATTTAAAGTTGTTTCATTAATTACCATATCTATAAAACAAACATAGTATCTGTCAATCTCTAGAAACCACAAGATGATGGAGAGGTCATAAAAACTGTGGTAGTATGCTTAGAAACTGTTGATTTAAAATATCTTGTGGTTATGATATCAGAGGCTAAATTTTGAAATAAAATATTTGGCAAATTCCTCCACATTAGTGTCAATGTTCCTATCATTTCTTAATATAAAAATAATACCATCAATTGCTGATTAATTTTTAAATGTATAGTATAGAAGCAGTTTCTGAACCAGATCTCTGCTACATAGGTTTTCAAACTTTAGTTGACTAATTCTTCTGATATGTTGATATACAAATCAGAACCAATGTTCAAGCCTGAAATAAAACTAAAGAACTTATAAAAGTTTTTAGAAAAATATAA
VastDB Features
Vast-tools module Information
Secondary ID
ENSG00000005187_CASSETTE1
Average complexity
S
Mappability confidence:
100%=100=100%
Protein Impact
Alternative protein isoforms (Ref)
No structure available
Features
Disorder rate (Iupred):
C1=0.147 A=0.075 C2=0.179
Domain overlap (PFAM):
C1:
PF131931=AMP-binding_C=PU(32.1=76.5)
A:
PF0050123=AMP-binding=PD(3.6=7.3),PF131931=AMP-binding_C=FE(64.5=100)
C2:
PF131931=AMP-binding_C=PD(16.0=44.8)
Main Skipping Isoform:
NA
Other Skipping Isoforms:
NA
Associated events
Other assemblies
Conservation
Fruitfly
(dm6)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
AAATGCCCTGAATGAACACCCT
R:
TGACCTCTCCATCATCTTGTGGT
Band lengths:
242-362
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]
SPECIAL DATASETS
- Autistic and control brains
- Pre-implantation embryo development
Other AS DBs:
FasterDB (Includes CLIP-seq data)
AS-ALPS (AS-induced ALteration of Protein Structure, links to PINs)
APPRIS (Selection of principal isoform)
DEU primates (Only for human)