RnoEX6004610 @ rn6
Exon Skipping
Gene
ENSRNOG00000032246 | Acsm3
Description
acyl-CoA synthetase medium-chain family member 3 [Source:RGD Symbol;Acc:62086]
Coordinates
chr1:189534599-189541224:+
Coord C1 exon
chr1:189534599-189534698
Coord A exon
chr1:189540150-189540269
Coord C2 exon
chr1:189540615-189541224
Length
120 bp
Sequences
Splice sites
3' ss Seq
GTTTTACACATTTACTTTAGGTA
3' ss Score
8.03
5' ss Seq
AAGGTAGGT
5' ss Score
10.29
Exon sequences
Seq C1 exon
TTACCGAATTGGACCATTTGAGGTAGAGAGTGCTCTCATAGAGCATCCTTCCATTGCAGAGTCAGCTGTTGTCAGCAGCCCTGACCCCATCAGAGGAGAG
Seq A exon
GTAGTAAAGGCCTTTATTGTCCTAAATCCTGATTACAAACTCCATGATCAAGAACAACTGAAAAAAGAGATTCAGGAGCATGTGAAAAAGACTACAGCACCTTACAAATACCCCAGGAAG
Seq C2 exon
ATAGAATTTATTGAGGAGCTGCCAAAGACTGTCAGTGGGAAGGTCAAAAGAAATGAACTGAGGAGAAAGGAATGGACAACAACTTAAACTTGGCCCACTAATCACCTGCATATCTACAAGTAAACACAGTGTCTCTGAGTCTACAGGAACCACAGATCACGTGGGCAGACTGCTTTTAAATTGGATTTAAACTATTTTGTAGAATGAAACCATAGGCTGAATTATGAAATCATATAATCACTGAATCCTTCTGCCTTCATGTCAATGTTCCTGTAATTTGCAACATAAAATGAATGTTATCAGATGCCGTGATGCCTTAAAATTTATTTTAGGAGCTGTTTCTAAACCAAATCTCTGCCCCATGGGTTTTCAAAACTTAACTGAACAATTCTAATATGCCAATATACAAATCAGAACAAATCTTCAAGCTTTGAAGGAAACTGTCATAATTCTTAGAATACTTACCTAAAAGTTGAGTAGGAATTTTACTAGTCATAATT
VastDB Features
Vast-tools module Information
Secondary ID
ENSRNOG00000032246-'18-23,'18-22,19-23=AN
Average complexity
A_S
Mappability confidence:
100%=100=100%
Protein Impact
Alternative protein isoforms (Ref)
No structure available
Features
Disorder rate (Iupred):
C1=0.029 A=0.100 C2=0.214
Domain overlap (PFAM):
C1:
PF131931=AMP-binding_C=PU(32.1=76.5)
A:
PF131931=AMP-binding_C=FE(48.1=100)
C2:
PF131931=AMP-binding_C=PD(16.0=44.8)
Main Skipping Isoform:
NA
Other Inclusion Isoforms:
NA
Other Skipping Isoforms:
NA
Associated events
Conservation
Fruitfly
(dm6)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
GGACCATTTGAGGTAGAGAGTGC
R:
CCACGTGATCTGTGGTTCCTG
Band lengths:
254-374
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]