Special

BtaEX6108977 @ bosTau6

Exon Skipping

Gene
Description
acyl-CoA synthetase medium-chain family member 3 [Source:HGNC Symbol;Acc:HGNC:10522]
Coordinates
chr25:18653141-18656582:+
Coord C1 exon
chr25:18653141-18653240
Coord A exon
chr25:18655754-18655873
Coord C2 exon
chr25:18656271-18656582
Length
120 bp
Sequences
Splice sites
3' ss Seq
CATTCAAATATTTATTTTAGGTA
3' ss Score
8.46
5' ss Seq
AAGGTAGGT
5' ss Score
10.29
Exon sequences
Seq C1 exon
TTACCGAATTGGTCCGTTTGAGGTAGAAAGTGCCCTTATTGAACATCCTGCAGTTGCAGAGTCAGCTGTTGTCAGCAGTCCAGATCCCATCAGAGGAGAG
Seq A exon
GTAGTAAAGGCTTTTATTGTTCTGAATCCTGATTACAAGTCACATGATCAAGAACAACTAAAAAAGGAGATTCAGGAGCATGTAAAAAGAAATACAGCACCTTACAAATATCCCAGAAAG
Seq C2 exon
GTAGAATTTATTCAGGAGCTGCCAAAGACTATTAGTGGGAAGATAAAAAGAAACGAACTGAGGAAGAAAGAATGGGAAACAATTTAAGTCTATTCCAGTAATTATGATGGTCTCTAAAAAATAAGACTCTGTAAAATCAAAGATTATGAAACGGTGGTAAAAAATGTGATAGTATGCTTATGAACTAATTGATTTAAAATAGCCTGTGGTTATAAGCTCACAGGCTGGATTCTGAAATAAAACATTCAATAAATTCCTCTGCATCAGTGTCAATGTTTTTAAAATTTGGTAATATAAAAAGAATATCACCAG
VastDB Features
Vast-tools module Information
Secondary ID
ENSBTAG00000006447-'12-17,'12-16,14-17=AN
Average complexity
A_S
Mappability confidence:
100%=100=100%
Protein Impact

Alternative protein isoforms (Ref)

No structure available
Features
Disorder rate (Iupred):
  C1=0.000 A=0.250 C2=0.000
Domain overlap (PFAM):

C1:
PF131931=AMP-binding_C=PU(32.1=76.5)
A:
PF131931=AMP-binding_C=FE(48.1=100)
C2:
PF131931=AMP-binding_C=PD(16.0=44.8)


Main Inclusion Isoform:


Main Skipping Isoform:
NA


Other Inclusion Isoforms:
NA


Other Skipping Isoforms:
NA
Associated events
Conservation
Chicken
(galGal3)
HIGH PSI
([1])
Zebrafish
(danRer10)
HIGH PSI
Fruitfly
(dm6)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
GTCCAGATCCCATCAGAGGAGA
R:
TCAGAATCCAGCCTGTGAGCT
Band lengths:
258-378
Functional annotations
There are 0 annotated functions for this event


GENOMIC CONTEXT[edit]

INCLUSION PATTERN[edit]