GgaEX1006067 @ galGal3
Exon Skipping
Description
NA
Coordinates
chr14:15635280-15636430:+
Coord C1 exon
chr14:15635280-15635379
Coord A exon
chr14:15635804-15635923
Coord C2 exon
chr14:15636078-15636430
Length
120 bp
Sequences
Splice sites
3' ss Seq
GCTCCCTTACTGTCTTCAAGGTA
3' ss Score
7.75
5' ss Seq
AAAGTAAGT
5' ss Score
9.72
Exon sequences
Seq C1 exon
ATACCGCATTGGACCATTTGAAGTAGAAAGTGCTCTAATAGAGCATCCTGCAGTGCTGGAATCAGCTGTTGTCAGCAGTCCAGACCCCATCAGGGGAGAG
Seq A exon
GTAGTGAAAGCCTTTGTTGTTTTAACGCCCAACTACGTCTCACATGATCCAGAAAAAATGATGAAAGATCTACAAGATCACGTTAAGAAAGCTACTGCTCCATACAAGTATCCTCGGAAA
Seq C2 exon
ATGGAGTTTGTTCGAGAGCTGCCAAAAACCATTAGTGGGAAGATCCGAAGAAATGAATTACGCCAGAAGGAGTGGAGGAGATATTAGAATGCTTTGGGTGTTGCTTTAACATAGTGGTGGCTTTTTGCTTTGTTTGTTTAAATAAAAAAAAGATAATGATGATTTACACAGTAATGTGAAGGCACACAATGTCTCTCTTAGTTGACATTTTCACTAACTCTCACCTGACCCCCAGCACTCGGCTGCCCCGGTGCCACATGGAGGGAACAAAAGCAGGCAGGCTGATACGAATGACACAAAAGTTGTCTAATCAAGAGTGCAATGGATGATGTGTTAAATAAACTTAATGAACC
VastDB Features
Vast-tools module Information
Secondary ID
ENSGALG00000002200-'11-13,'11-10,12-13=AN
Average complexity
A_S
Mappability confidence:
100%=100=100%
Protein Impact
Alternative protein isoforms (Ref)
No structure available
Features
Disorder rate (Iupred):
C1=0.000 A=0.150 C2=0.000
Domain overlap (PFAM):
C1:
PF131931=AMP-binding_C=PU(32.1=76.5)
A:
PF131931=AMP-binding_C=FE(48.1=100)
C2:
PF131931=AMP-binding_C=PD(16.0=44.8)
Main Skipping Isoform:
NA
Other Inclusion Isoforms:
NA
Other Skipping Isoforms:
NA
Associated events
Other assemblies
Conservation
Fruitfly
(dm6)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
GCAGTCCAGACCCCATCAGG
R:
GGGGTCAGGTGAGAGTTAGTGA
Band lengths:
258-378
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]