GgaEX1006067 @ galGal4
Exon Skipping
Gene
ENSGALG00000002200 | ACSM3
Description
acyl-CoA synthetase medium-chain family member 3 [Source:HGNC Symbol;Acc:HGNC:10522]
Coordinates
chr14:14921202-14922086:+
Coord C1 exon
chr14:14921202-14921301
Coord A exon
chr14:14921726-14921845
Coord C2 exon
chr14:14922000-14922086
Length
120 bp
Sequences
Splice sites
3' ss Seq
GCTCCCTTACTGTCTTCAAGGTA
3' ss Score
7.75
5' ss Seq
AAAGTAAGT
5' ss Score
9.72
Exon sequences
Seq C1 exon
ATACCGCATTGGACCATTTGAAGTAGAAAGTGCTCTAATAGAGCATCCTGCAGTGCTGGAATCAGCTGTTGTCAGCAGTCCAGACCCCATCAGGGGAGAG
Seq A exon
GTAGTGAAAGCCTTTGTTGTTTTAACGCCCAACTACGTCTCACATGATCCAGAAAAAATGATGAAAGATCTACAAGATCACGTTAAGAAAGCTACTGCTCCATACAAGTATCCTCGGAAA
Seq C2 exon
ATGGAGTTTGTTCGAGAGCTGCCAAAAACCATTAGTGGGAAGATCCGAAGAAATGAATTACGCCAGAAGGAGTGGAGGAGATATTAG
VastDB Features
Vast-tools module Information
Secondary ID
ENSGALG00000002200-'15-19,'15-16,17-19
Average complexity
S
Mappability confidence:
100%=100=100%
Protein Impact
Alternative protein isoforms (Ref)
No structure available
Features
Disorder rate (Iupred):
C1=0.000 A=0.150 C2=0.000
Domain overlap (PFAM):
C1:
PF131931=AMP-binding_C=PU(32.1=76.5)
A:
PF131931=AMP-binding_C=FE(48.1=100)
C2:
PF131931=AMP-binding_C=PD(16.0=44.8)
Main Skipping Isoform:
NA
Other Inclusion Isoforms:
NA
Other Skipping Isoforms:
NA
Associated events
Other assemblies
Conservation
Fruitfly
(dm6)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
ATACCGCATTGGACCATTTGA
R:
TAATATCTCCTCCACTCCTTCTGGC
Band lengths:
186-306
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]