GgaEX1003813 @ galGal3
Exon Skipping
Description
NA
Coordinates
chr14:15234926-15236810:-
Coord C1 exon
chr14:15236711-15236810
Coord A exon
chr14:15236001-15236120
Coord C2 exon
chr14:15234926-15235409
Length
120 bp
Sequences
Splice sites
3' ss Seq
CTTTCACTTTTGTGGCACAGGTA
3' ss Score
7.54
5' ss Seq
AAGGTAAGT
5' ss Score
11
Exon sequences
Seq C1 exon
GTATCGTATTGGTCCATTTGAAGTTGAAAGTGCATTAATACAACACCCGGCAGTCTCAGAGTCAGCTGTTGTCAGCAGTCCTGATCCAATTCGAGGGGAG
Seq A exon
GTAGTCAAAGCCTTCGTTGTTTTGGCTCCTGCTTTTGCATCACACGACCCAGAAAAACTAACTCATGATCTTCAGCAACATGTCAAAAAGGTGACTGCTCCTTACAAGTACCCCAGAAAG
Seq C2 exon
GTGGAGTTTGTTCAGTCTCTGCCAAAGACAGCTACGGGGAAAATCCAGAGAAAGGTTCTGAGAAACAAAGAGTGGGGAAAAGCATAACATTATCTGAAAATGGAGGAGAGAAAATTTCCATCATCCATATCAGCCAAAGCACAGTGTTTGGACTTGGCATGTTAACATGAACCAGAGCACTAAGAGAATGTATGGAAGAACAAACTGTGGGGAGGCGTAAATGGGGGCACCGCTCATATAACTTGAGGATGTGTGATATGAGAACCACTTCTACCATTAACCCACAACAATTCAGATGAGAAAAGACACAAATAATTAAAAATGTGGTATGAGAAAGAACAGAGTGATCCAAGACTGCATGGAAGTTTAATTTTTTTTACTGCAGTTAATATAAACATCAGATTCTTTTAAAGAAATAAAGGTCCACAGCAATTTTGACAATTACAAATAAATGAGAAATTAATAAAAACAATCTCTGCCCTGT
VastDB Features
Vast-tools module Information
Secondary ID
ENSGALG00000001961-'10-11,'10-10,11-11=AN
Average complexity
A_S
Mappability confidence:
100%=100=100%
Protein Impact
Alternative protein isoforms (Ref)
No structure available
Features
Disorder rate (Iupred):
C1=0.029 A=0.075 C2=0.000
Domain overlap (PFAM):
C1:
PF131931=AMP-binding_C=PU(32.1=76.5)
A:
PF131931=AMP-binding_C=FE(48.1=100)
C2:
PF131931=AMP-binding_C=PD(16.0=44.8)
Main Skipping Isoform:
NA
Other Inclusion Isoforms:
NA
Other Skipping Isoforms:
NA
Associated events
Other assemblies
Conservation
Fruitfly
(dm6)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
TCCTGATCCAATTCGAGGGGA
R:
TTTACGCCTCCCCACAGTTTG
Band lengths:
243-363
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]