HsaEX6042591 @ hg38
Exon Skipping
Gene
ENSG00000183549 | ACSM5
Description
acyl-CoA synthetase medium-chain family member 5 [Source:HGNC Symbol;Acc:HGNC:26060]
Coordinates
chr16:20437268-20441336:+
Coord C1 exon
chr16:20437268-20437367
Coord A exon
chr16:20439800-20439919
Coord C2 exon
chr16:20440344-20441336
Length
120 bp
Sequences
Splice sites
3' ss Seq
GGTATTTTGTTTTCCTGCAGGTG
3' ss Score
10.68
5' ss Seq
AAGGTAAAT
5' ss Score
8.88
Exon sequences
Seq C1 exon
CTACCGGATCGGGCCTGTTGAAGTGGAAAGTGCCCTGGCAGAGCATCCTGCTGTCCTGGAGTCGGCTGTGGTCAGCAGCCCAGACCCCATCAGGGGAGAG
Seq A exon
GTGGTAAAGGCATTTATAGTCCTTACTCCAGCCTACTCCTCTCATGACCCAGAGGCACTAACGCGGGAACTCCAGGAGCATGTGAAAAGGGTGACTGCTCCATACAAATACCCCAGGAAG
Seq C2 exon
GTGGCCTTTGTTTCAGAACTGCCAAAGACGGTTTCTGGAAAGATCCAAAGGAGTAAATTGCGAAGTCAGGAGTGGGGGAAATGAGGTGCACCCCAGGAAGGCCCCGTAGACCTCCGAAGACTCCACAAGAAACTAATGGATCACTGGTCAGTCCCCATGGGGAGCATCATCTCTTCGACCCTAAAGATGTCAAAGGTGTGCAGCTTCCAAACGGCATCCCCAGGATCACTGGGCAATGCTGGAAAGAGCAAAAGAATATCATTGGCCCTGATCACATAGATGCTGCGCCGCCTAGCAAATGCTTGGTGGTTCGACTTCTCCCTCTGTCTGGGGGCAGGCTCAGCATCTGCCCACTGGTCTCACTAAGAGCTTTCAGATTTCCCTCCATAGGACAGGTTACCATAGACTTGGGGCACTTGTGGGTACTCATTTTCTGCCAGTGGGAATGTAAAGGCTTCATCCTTTGTATGTAACCATTTGGCAAAAGTATGCAGGAACAT
VastDB Features
Vast-tools module Information
Secondary ID
ENSG00000183549-'22-22,'22-21,23-22
Average complexity
S
Mappability confidence:
100%=100=100%
Protein Impact
Alternative protein isoforms (Ref)
No structure available
Features
Disorder rate (Iupred):
C1=0.000 A=0.100 C2=0.037
Domain overlap (PFAM):
C1:
PF131931=AMP-binding_C=PU(32.1=76.5)
A:
PF131931=AMP-binding_C=FE(48.1=100)
C2:
PF131931=AMP-binding_C=PD(16.0=46.4)
Main Skipping Isoform:
NA
Other Inclusion Isoforms:
NA
Other Skipping Isoforms:
NA
Associated events
Other assemblies
Conservation
Fruitfly
(dm6)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
GGGCCTGTTGAAGTGGAAAGT
R:
GGGGACTGACCAGTGATCCAT
Band lengths:
246-366
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]
SPECIAL DATASETS
- Autistic and control brains