GgaEX1003828 @ galGal3
Exon Skipping
Description
NA
Coordinates
chr14:15220044-15221566:-
Coord C1 exon
chr14:15221467-15221566
Coord A exon
chr14:15220918-15221037
Coord C2 exon
chr14:15220044-15220130
Length
120 bp
Sequences
Splice sites
3' ss Seq
TTAATGACCTTGTCTTCTAGGTT
3' ss Score
10.1
5' ss Seq
AAGGTAAAT
5' ss Score
8.88
Exon sequences
Seq C1 exon
GTATCGCATTGGGCCATTTGAGGTAGAGAGTGCCCTGATAGAACACCCAGCAGTAGCAGAAACAGCTGTTGTCAGCAGTCCAGATCCCCTCAGAGGAGAG
Seq A exon
GTTGTGAAAGCATTTGTGGTCCTGTCTGACGCCTTTTCATCCAGTGATTGTGAGAGCTTAGCCCGCGACTTGCAGGAGCATGTCAAGAAAACCACTGCTCCATATAAATACCCCAGGAAG
Seq C2 exon
GTGGAATTCGTCCAGGAGCTGCCAAAGACAATCACTGGGAAGATAAAGAGGAATGAATTAAGAGCCAAAGAGTGGGGACAGATGTAG
VastDB Features
Vast-tools module Information
Secondary ID
ENSGALG00000018875-'10-12,'10-11,11-12=AN
Average complexity
A_S
Mappability confidence:
100%=100=100%
Protein Impact
Alternative protein isoforms (Ref)
No structure available
Features
Disorder rate (Iupred):
C1=0.059 A=0.025 C2=0.000
Domain overlap (PFAM):
C1:
PF131931=AMP-binding_C=PU(32.1=76.5)
A:
PF131931=AMP-binding_C=FE(48.1=100)
C2:
PF131931=AMP-binding_C=PD(16.0=44.8)
Main Skipping Isoform:
NA
Other Inclusion Isoforms:
NA
Other Skipping Isoforms:
NA
Associated events
Other assemblies
Conservation
Human
(hg19)
No conservation detected
Rat
(rn6)
No conservation detected
Zebrafish
(danRer10)
No conservation detected
Fruitfly
(dm6)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
TATCGCATTGGGCCATTTGAGG
R:
CTACATCTGTCCCCACTCTTTGG
Band lengths:
186-306
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]