MmuEX6013592 @ mm10
Exon Skipping
Gene
ENSMUSG00000047026 | Acsm4
Description
acyl-CoA synthetase medium-chain family member 4 [Source:MGI Symbol;Acc:MGI:2681844]
Coordinates
chr7:119711328-119714565:+
Coord C1 exon
chr7:119711328-119711427
Coord A exon
chr7:119712842-119712961
Coord C2 exon
chr7:119714258-119714565
Length
120 bp
Sequences
Splice sites
3' ss Seq
AAATGGTTGTTCTGCTGCAGGTG
3' ss Score
7.58
5' ss Seq
AAAGTAGGT
5' ss Score
6.84
Exon sequences
Seq C1 exon
GTACCGAATTGGGCCTTTTGAAGTAGAGAGCGCACTGATAGAGCACCCAGCAGTAGTTGAGTCAGCTGTTGTCAGCAGTCCAGATCCGATCCGAGGAGAG
Seq A exon
GTGGTGAAGGCATTTATTGTACTAGCTGCACCCTACAAGTGCTCCAACCGTGAGAAGTTAACCGCTGAACTTCAGGATCATGTGAAAAATTCAACAGCACCTTACAAATACCCAAGAAAA
Seq C2 exon
GTGGAATTTGTTCAAGAACTCCCAAAGACAATCACTGGGAAAATCAAACGCAACGTGTTAAGAGACCAGGAATGGGGAAGAGCATAGCTGGATGAGAACCTTGCTAGAAGTGATGCGGTTGGTTTCAGTACCAGCTTCCTGATAGTTCAACGGCTACTCTTAAAATGCTTGAACATTTTTTTTCCTATTTCACTCTTAAAATGCTTTGTCTTTCCTGTTTCGCTCTTAAAATGCTTTAACACTTGTTTTTTTCCTGCTTGAAAATAGTTCTATCTAGGAAAACAATAAAGAAACAACCAAAATCTAAA
VastDB Features
Vast-tools module Information
Secondary ID
ENSMUSG00000047026-'1-12,'1-11,12-12=AN
Average complexity
A_S
Mappability confidence:
NA
Protein Impact
Alternative protein isoforms (Ref)
No structure available
Features
Disorder rate (Iupred):
C1=0.000 A=0.025 C2=0.000
Domain overlap (PFAM):
C1:
PF131931=AMP-binding_C=PU(32.1=76.5)
A:
PF131931=AMP-binding_C=FE(48.1=100)
C2:
PF131931=AMP-binding_C=PD(16.0=44.8)
Main Skipping Isoform:
NA
Other Inclusion Isoforms:
NA
Other Skipping Isoforms:
NA
Associated events
Other assemblies
Conservation
Rat
(rn6)
No conservation detected
Fruitfly
(dm6)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
GTTGTCAGCAGTCCAGATCCG
R:
GCGAAACAGGAAAGACAAAGCA
Band lengths:
256-376
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]
SPECIAL DATASETS
- Ribosome-engaged transcriptomes of neuronal types
- Neural differentiation time course
- Muscular differentiation time course
- Spermatogenesis cell types
- Reprogramming of fibroblasts to iPSCs
- Hematopoietic precursors and cell types