HsaALTA1061623-1/2 @ hg38
Alternative 3'ss
Gene
ENSG00000260510 | AC004381.7
Description
NA
Coordinates
chr16:20743663-20764023:-
Coord C1 exon
chr16:20763881-20764023
Coord A exon
NA
Coord C2 exon
chr16:20743663-20743850
Length
0 bp
Sequences
Splice sites
5' ss Seq
CAGGTAATG
5' ss Score
9.43
3' ss Seq
ATTTGATATCCTAAGGACAGGTG
3' ss Score
0.8
Exon sequences
Seq C1 exon
TCTAAAGAAGAGGGAGGAGCAGTCTGACAATCCGGAGGAGCAAGACTGGCCCAAAACACTTTCCTTGATTGGTGGAGACATTCTGGAGGAGGAGCCAAGCTCTGGGCTAAAGTTTACAGGACTCCCAGCGGTTCCTCTTACAG
Seq A exon
NA
Seq C2 exon
GTGGCAGAGTGTGGGCAACTGAAACCCAGCCAGCAGAAGAGAGAGAGATTTGGGGGAAGGCCAATGCCAGTGTCATGACACTGCTCTTCACAAACAACTGAGGACTTCTAGAAATCTCTGCTGTGCAGTGTCCACCAAAGAAATTCTGAAAATTAAATGCTGTATTGAATACACAGGTAAAAGCAAAC
VastDB Features
Vast-tools module Information
Secondary ID
ENSG00000260510-1-5,1-4-1/2
Average complexity
Alt3
Mappability confidence:
NA
Protein Impact
NonCoding
No structure available
Features
Disorder rate (Iupred):
C1=NA A=NA C2=NA
Domain overlap (PFAM):
C1:
NA
A:
NA
C2:
NA
Main Inclusion Isoform:
NA
Main Skipping Isoform:
NA
Other Inclusion Isoforms:
NA
Other Skipping Isoforms:
NA
Associated events
Conservation
Mouse
(mm10)
No conservation detected
Mouse
(mm9)
No conservation detected
Rat
(rn6)
No conservation detected
Cow
(bosTau6)
No conservation detected
Chicken
(galGal4)
No conservation detected
Chicken
(galGal3)
No conservation detected
Zebrafish
(danRer10)
No conservation detected
Fruitfly
(dm6)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
AGACATTCTGGAGGAGGAGCC
R:
GGTTTCAGTTGCCCACACTCT
Band lengths:
94-99
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]
SPECIAL DATASETS
- Autistic and control brains