HsaEX7008863 @ hg38
Exon Skipping
Gene
ENSG00000005187 | ACSM3
Description
acyl-CoA synthetase medium-chain family member 3 [Source:HGNC Symbol;Acc:HGNC:10522]
Coordinates
chr16:20749910-20770253:+
Coord C1 exon
chr16:20749910-20750003
Coord A exon
chr16:20755573-20755616
Coord C2 exon
chr16:20769984-20770253
Length
44 bp
Sequences
Splice sites
3' ss Seq
ATATTTCATCTTCATTCCAGTTT
3' ss Score
6.6
5' ss Seq
GTGGTAAGT
5' ss Score
10.36
Exon sequences
Seq C1 exon
GTGTCAGAGCCAGAGGAGAAGAGTGGACAACCCAACTGCCCACCACAGGTCCCTAGAAGTACAGGTCAAGCCTATGCTGGGGAGAGGCAAACAG
Seq A exon
TTTCCTGGTACATAGCCGCTAAAACCCCTGGAATTTCTGAAGTG
Seq C2 exon
ATGAACTGGTCTCTGTGCAAATCCTGAGTGCTAAAGCTTCCAACAAGACTGATGCTAGCTCGTGTCACCAGGAAGATGCTACGTCATGCCAAGTGTTTTCAGCGCCTAGCAATTTTTGGTTCTGTGAGGGCACTGCATAAAGATAATAGAACAGCAACCCCTCAGAATTTCTCCAACTATGAATCCATGAAACAGGACTTCAAACTGGGGATTCCAGAGTATTTCAACTTTGCTAAAGATGTCCTGGACCAATGGACTGATAAGGAAAAG
VastDB Features
Vast-tools module Information
Secondary ID
ENSG00000005187-'22-29,'22-18,24-29=AN
Average complexity
A_C1
Mappability confidence:
100%=100=100%
Protein Impact
5' UTR
No structure available
Features
Disorder rate (Iupred):
C1=NA A=NA C2=0.047
Domain overlap (PFAM):
C1:
NA
A:
NA
C2:
PF0050123=AMP-binding=PU(0.5=2.7)
Main Inclusion Isoform:
NA
Main Skipping Isoform:
NA
Other Inclusion Isoforms:
NA
Other Skipping Isoforms:
NA
Associated events
Conservation
Mouse
(mm10)
No conservation detected
Mouse
(mm9)
No conservation detected
Rat
(rn6)
No conservation detected
Cow
(bosTau6)
No conservation detected
Chicken
(galGal4)
No conservation detected
Chicken
(galGal3)
No conservation detected
Zebrafish
(danRer10)
No conservation detected
Fruitfly
(dm6)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
CCACCACAGGTCCCTAGAAGT
R:
CATCTTCCTGGTGACACGAGC
Band lengths:
133-177
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]
SPECIAL DATASETS
- Autistic and control brains