RnoEX6004606 @ rn6
Exon Skipping
Gene
ENSRNOG00000014726 | Acsm4
Description
acyl-CoA synthetase medium-chain family member 4 [Source:RGD Symbol;Acc:727928]
Coordinates
chr1:189440767-189446181:+
Coord C1 exon
chr1:189440767-189440974
Coord A exon
chr1:189445574-189445717
Coord C2 exon
chr1:189446025-189446181
Length
144 bp
Sequences
Splice sites
3' ss Seq
ATCTTGGGGTTCATCCGCAGATC
3' ss Score
8.69
5' ss Seq
AAGGTAGGA
5' ss Score
9.45
Exon sequences
Seq C1 exon
GGCTTGTCTTCATGCCTGGAACAATCCAACTGACCAGAAAAGACATCCTCTACCGGCTGCAAGCATCCAAGGCCAAGTGCATTGTGGCCAGTGAGGAAGTGGCCCCTGCAGTGGACTCCATTGCATCAGAGTGTCCCAACTTGAAGACTAAGCTTCTGGTGTCTCCACACCGCTGGGACGGGTGGCTCAGCTTTCAGGAATTACTTCA
Seq A exon
ATCAGCCTCTGAAGAGCACAATTGTGTGCAGACAGGAAGTCAAGAGCCAATGGCCATTTACTTCACCAGTGGGACCACAGGCTCCCCCAAGATGGCTCAGCACTCACAGAGCAGCCTTGGCATTGGGTATGCCCTTTGTGGAAG
Seq C2 exon
GTACTGGCTGGACTTGACATCATCAGATATCATGTGGAACATGTCAGACACTGGCTGGATCAAGGCTGCCATTGGTAGTGTGTTTTCCACGTGGCTTCGAGGTGCCTGTGTTTTTGTGCACCGGATGGCCCAGTTCAACACTGATACCTTCCTAGAT
VastDB Features
Vast-tools module Information
Secondary ID
ENSRNOG00000014726-'3-4,'3-3,5-4=AN
Average complexity
A_S
Mappability confidence:
100%=100=100%
Protein Impact
Alternative protein isoforms (Ref)
No structure available
Features
Disorder rate (Iupred):
C1=0.000 A=0.000 C2=0.000
Domain overlap (PFAM):
C1:
PF0050123=AMP-binding=FE(16.6=100)
A:
PF0050123=AMP-binding=FE(11.6=100)
C2:
PF0050123=AMP-binding=FE(12.5=100)
Main Skipping Isoform:
NA
Other Inclusion Isoforms:
NA
Other Skipping Isoforms:
NA
Associated events
Conservation
Human
(hg38)
No conservation detected
Human
(hg19)
No conservation detected
Mouse
(mm10)
No conservation detected
Chicken
(galGal4)
No conservation detected
Fruitfly
(dm6)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
ATTGTGGCCAGTGAGGAAGTG
R:
CCATCCGGTGCACAAAAACAC
Band lengths:
256-400
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]