DreEX6028910 @ danRer10
Exon Skipping
Gene
ENSDARG00000004880 | acsm3
Description
acyl-CoA synthetase medium-chain family member 3 [Source:ZFIN;Acc:ZDB-GENE-080220-22]
Coordinates
chr2:44882657-44887721:-
Coord C1 exon
chr2:44887514-44887721
Coord A exon
chr2:44886073-44886216
Coord C2 exon
chr2:44882657-44882813
Length
144 bp
Sequences
Splice sites
3' ss Seq
ATGTTATGTTTGTGTTGCAGAAG
3' ss Score
9.75
5' ss Seq
CAGGTTTGT
5' ss Score
7.44
Exon sequences
Seq C1 exon
GTACAGTTCTCATTCCTGGCACCTCTCAGCTCACAGCTCGAGATATGCGTCACAGACTGATAACGTCTGGGGCCAAGTGTGTGATCACAGATGAAACTCTGGCTCCACTGTTGGACACTGTAGCCTTAGACTGCCCTTCCATTTCCACCAAGCTGCTGCTGTCCCACAAGCCCATGGACGGCTGGGGCAACCTGACAGAGCTCATGGG
Seq A exon
AAGAGTATCAGATGACCATGTTTGTGTGGACACCAGCAGTGAGGAGCCCATGACCATCTTCTTCACCAGTGGCACAACGGGCTCCCCAAAAATGACCCAACACAGCCACTGTAGTTACGGTTTGGGGCTCACCGTGAACGGCAG
Seq C2 exon
GTACTGGCTGGATCTGACTGAGCAGGATGTATTCTGGAACACCTCTGACACGGGCTGGGCGAAATCAGCGTGGAGCAGTGTGTTTGCTCCGTGGATTCAGGGAGCTTGTGTGTTTGTTCACCACATGCCACGCTTTGACACAAACACAGTTCTTAAG
VastDB Features
Vast-tools module Information
Secondary ID
ENSDARG00000004880-'3-4,'3-2,4-4=AN
Average complexity
A_S
Mappability confidence:
100%=100=100%
Protein Impact
Alternative protein isoforms (Ref)
No structure available
Features
Disorder rate (Iupred):
C1=0.000 A=0.000 C2=0.000
Domain overlap (PFAM):
C1:
PF0050123=AMP-binding=FE(16.6=100)
A:
PF0050123=AMP-binding=FE(11.6=100)
C2:
PF0050123=AMP-binding=FE(12.5=100)
Main Skipping Isoform:
NA
Other Inclusion Isoforms:
NA
Other Skipping Isoforms:
NA
Associated events
Conservation
Fruitfly
(dm6)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
GATAACGTCTGGGGCCAAGTG
R:
CCTGAATCCACGGAGCAAACA
Band lengths:
251-395
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]