GgaEX6013246 @ galGal3
Exon Skipping
Description
NA
Coordinates
chr14:15629722-15631342:+
Coord C1 exon
chr14:15629722-15629929
Coord A exon
chr14:15630158-15630301
Coord C2 exon
chr14:15631189-15631342
Length
144 bp
Sequences
Splice sites
3' ss Seq
CTCATTTGTTTATTTTAAAGAAC
3' ss Score
5.65
5' ss Seq
AAGGTATGT
5' ss Score
9.79
Exon sequences
Seq C1 exon
GAACCGTCCCGATTCCTGGCACACAGCAGCTGACAGCAAAGGACATTCTCTATCGCCTACAGAAATCCAAGGCAAAGGGCGTCATCACCAATGACTCTGTGGCATCAACTGTAGAGTCAGTAGAGGCTGACTGCCAGTCTCTGAAGTTCAAGTTGCTGGTGTCAGAGGGCCACCGAGAGGGGTGGCTGAGCTTCAAGGATCTCCTGAA
Seq A exon
AACTGCTCCATCTGATCACCGGTGTGTAACCACAAAGTCTCAACACCCCGTGGCCATCTATTTTACTAGTGGGACAACGGGAGCTCCAAAAATGACAGAACATTCCCACTGCAGCTATGGCATTGGCCTCACAGTGAGTGGAAG
Seq C2 exon
GTACTGGCTGAACCTGACCTCTTCAGATATATATTGGAATACCTCAGACACGGGCTGGGCCAAGGCAGCATGGAGCATTTTTTCAGCATGGAGTCAAGGGGCATGTGTATTTGTACATAAGATGCCACAGTTCAGCCCTCCTGCTGTCTTTGAG
VastDB Features
Vast-tools module Information
Secondary ID
ENSGALG00000002200-'2-3,'2-2,3-3=AN
Average complexity
A_S
Mappability confidence:
100%=100=100%
Protein Impact
Alternative protein isoforms (Ref)
No structure available
Features
Disorder rate (Iupred):
C1=0.000 A=0.000 C2=0.000
Domain overlap (PFAM):
C1:
PF0050123=AMP-binding=FE(16.6=100)
A:
PF0050123=AMP-binding=FE(11.5=100)
C2:
PF0050123=AMP-binding=FE(12.3=100)
Main Skipping Isoform:
NA
Other Inclusion Isoforms:
NA
Other Skipping Isoforms:
NA
Associated events
Other assemblies
Conservation
Fruitfly
(dm6)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
AGAAATCCAAGGCAAAGGGCG
R:
TACACATGCCCCTTGACTCCA
Band lengths:
257-401
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]