RnoEX0006233 @ rn6
Exon Skipping
Gene
ENSRNOG00000032246 | Acsm3
Description
acyl-CoA synthetase medium-chain family member 3 [Source:RGD Symbol;Acc:62086]
Coordinates
chr1:189527734-189529056:+
Coord C1 exon
chr1:189527734-189527941
Coord A exon
chr1:189528563-189528706
Coord C2 exon
chr1:189528900-189529056
Length
144 bp
Sequences
Splice sites
3' ss Seq
CTGTAGATTGTCCTTTGCAGATA
3' ss Score
8.29
5' ss Seq
AAGGTATTT
5' ss Score
7.64
Exon sequences
Seq C1 exon
GGACAGTTTTAATTCCAGGAACCACTCAGCTGACCCAGAAAGACATCCTCTACAGGCTACAATCTTCAAAATCAAAGTGCATTATTACTGATGATACTTTGGCCCCAGCAGTAGATATTGTAGCAGCTAAATGTGAAAATCTCCACTCCAAATTAATTGTGTCTCAGCACTCCAGAGAAGGCTGGGGGAACCTCAAGGAGATGATGAA
Seq A exon
ATATGCCAGTGACAGCCACACCTGTGTGGACACAAAACACAATGAGTTGATGGCCATCTACTTCACCAGTGGGACGACTGGGCCTCCGAAGATGATTGGACACACCCACAGCAGTTTTGGTTTAGGACTGTCTGTCAACGGAAG
Seq C2 exon
GTTCTGGCTGGATTTGATAGCCTCTGACGTGATGTGGAATACGTCAGATACAGGCTGGGCAAAGTCTGCATGGAGTAGTGTTTTTTCTCCGTGGACCCAAGGAGCATGTGTTTTTGCACACTATTTGCCCCGTTTTGATTCAACTTCCATCTTGCAA
VastDB Features
Vast-tools module Information
Secondary ID
ENSRNOG00000032246_CASSETTE1
Average complexity
S
Mappability confidence:
100%=100=100%
Protein Impact
Alternative protein isoforms (Ref)
No structure available
Features
Disorder rate (Iupred):
C1=0.000 A=0.000 C2=0.000
Domain overlap (PFAM):
C1:
PF0050123=AMP-binding=FE(16.7=100)
A:
PF0050123=AMP-binding=FE(11.6=100)
C2:
PF0050123=AMP-binding=FE(12.6=100)
Main Skipping Isoform:
NA
Other Inclusion Isoforms:
NA
Other Skipping Isoforms:
NA
Associated events
Conservation
Fruitfly
(dm6)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
TACTTTGGCCCCAGCAGTAGA
R:
ACGGGGCAAATAGTGTGCAAA
Band lengths:
247-391
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]