GgaEX6013246 @ galGal4
Exon Skipping
Gene
ENSGALG00000002200 | ACSM3
Description
acyl-CoA synthetase medium-chain family member 3 [Source:HGNC Symbol;Acc:HGNC:10522]
Coordinates
chr14:14915644-14917264:+
Coord C1 exon
chr14:14915644-14915851
Coord A exon
chr14:14916080-14916223
Coord C2 exon
chr14:14917111-14917264
Length
144 bp
Sequences
Splice sites
3' ss Seq
CTCATTTGTTTATTTTAAAGAAC
3' ss Score
5.65
5' ss Seq
AAGGTATGT
5' ss Score
9.79
Exon sequences
Seq C1 exon
GAACCGTCCCGATTCCTGGCACACAGCAGCTGACAGCAAAGGACATTCTCTATCGCCTACAGAAATCCAAGGCAAAGGGCGTCATCACCAATGACTCTGTGGCATCAACTGTAGAGTCAGTAGAGGCTGACTGCCAGTCTCTGAAGTTCAAGTTGCTGGTGTCAGAGGGCCACCGAGAGGGGTGGCTGAGCTTCAAGGATCTCCTGAA
Seq A exon
AACTGCTCCATCTGATCACCGGTGTGTAACCACAAAGTCTCAACACCCCGTGGCCATCTATTTTACTAGTGGGACAACGGGAGCTCCAAAAATGACAGAACATTCCCACTGCAGCTATGGCATTGGCCTCACAGTGAGTGGAAG
Seq C2 exon
GTACTGGCTGAACCTGACCTCTTCAGATATATATTGGAATACCTCAGACACGGGCTGGGCCAAGGCAGCATGGAGCATTTTTTCAGCATGGAGTCAAGGGGCATGTGTATTTGTACATAAGATGCCACAGTTCAGCCCTCCTGCTGTCTTTGAG
VastDB Features
Vast-tools module Information
Secondary ID
ENSGALG00000002200-'4-6,'4-5,5-6=AN
Average complexity
A_S
Mappability confidence:
100%=100=100%
Protein Impact
Alternative protein isoforms (Ref)
No structure available
Features
Disorder rate (Iupred):
C1=0.000 A=0.000 C2=0.000
Domain overlap (PFAM):
C1:
PF0050123=AMP-binding=FE(16.6=100)
A:
PF0050123=AMP-binding=FE(11.5=100)
C2:
PF0050123=AMP-binding=FE(12.3=100)
Main Skipping Isoform:
NA
Other Inclusion Isoforms:
NA
Other Skipping Isoforms:
NA
Associated events
Other assemblies
Conservation
Fruitfly
(dm6)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
AGAAATCCAAGGCAAAGGGCG
R:
TACACATGCCCCTTGACTCCA
Band lengths:
257-401
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]