MmuEX6013613 @ mm9
Exon Skipping
Gene
ENSMUSG00000030935 | Acsm3
Description
acyl-CoA synthetase medium-chain family member 3 [Source:MGI Symbol;Acc:MGI:99538]
Coordinates
chr7:126917202-126918761:+
Coord C1 exon
chr7:126917202-126917409
Coord A exon
chr7:126918027-126918170
Coord C2 exon
chr7:126918605-126918761
Length
144 bp
Sequences
Splice sites
3' ss Seq
CTGCAGTTTGTCCTTCACAGATA
3' ss Score
7.81
5' ss Seq
AAGGTATTT
5' ss Score
7.64
Exon sequences
Seq C1 exon
GGACAGTTTTAATTCCAGGAACCACTCAGCTGACCCAGAAAGACATCCTCTATAGACTACAATCTTCAAAAGCTAAGTGCATTATTACCGATGATACTTTGGCCCCAGCAGTAGATGCCGTGGCAGCTAAATGTGAAAATCTCCACTCCAAATTAATTGTGTCTCAGCACTCCAGAGAAGGCTGGGGGAACCTCAAGGAGATGATGAA
Seq A exon
ATATGCCAGTGACAGCCACACTTGTGTGGACACAAAACACGACGAGATGATGGCCATCTACTTCACCAGTGGGACAACTGGGCCTCCTAAGATGATTGGACACACCCACAGCAGCTTTGGTTTAGGATTGTCTGTCAATGGAAG
Seq C2 exon
GTTCTGGCTGGATTTGATAGCCTCCGATGTGATGTGGAATACTTCAGATACAGGCTGGGCAAAGTCTGCATGGAGTAGTGTTTTTTCTCCATGGACCCAAGGAGCATGTGTTTTTGCACACTATTTGCCCCGTTTTGAATCAACTTCCATCTTGCAA
VastDB Features
Vast-tools module Information
Secondary ID
ENSMUSG00000030935-'6-9,'6-7,7-9=AN
Average complexity
A_S
Mappability confidence:
100%=100=100%
Protein Impact
Alternative protein isoforms (Ref)
No structure available
Features
Disorder rate (Iupred):
C1=0.000 A=0.000 C2=0.000
Domain overlap (PFAM):
C1:
PF0050123=AMP-binding=FE(16.7=100)
A:
PF0050123=AMP-binding=FE(11.6=100)
C2:
PF0050123=AMP-binding=FE(12.6=100)
Main Skipping Isoform:
NA
Other Inclusion Isoforms:
Other Skipping Isoforms:
NA
Associated events
Other assemblies
Conservation
Fruitfly
(dm6)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
CTTTGGCCCCAGCAGTAGATG
R:
ACGGGGCAAATAGTGTGCAAA
Band lengths:
245-389
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]
Other AS DBs: