BtaEX6108972 @ bosTau6
Exon Skipping
Gene
ENSBTAG00000046098 | ACSM4
Description
acyl-CoA synthetase medium-chain family member 4 [Source:HGNC Symbol;Acc:HGNC:32016]
Coordinates
chr25:18545223-18551856:+
Coord C1 exon
chr25:18545223-18545430
Coord A exon
chr25:18550819-18550962
Coord C2 exon
chr25:18551700-18551856
Length
144 bp
Sequences
Splice sites
3' ss Seq
TTGGGGCCCATACTTTACAGAAC
3' ss Score
6.07
5' ss Seq
AAGGTAAGG
5' ss Score
10.51
Exon sequences
Seq C1 exon
GGCTTGTCTTCATGCCAGGAACAACCCAGCTGACAGCAAAAGACATCCTCTATCGGCTGCATGCATCTAAGGCCAAGTGCATCGTGGCCAGTGAGGAGGTGATCCCAGCAGTGGAGTCCATTGTGTCCGAGTGTCCAGACTTGAAGACCAAACTCCTGGTGTCTCCACACAGCCAGGATGGGTGGCTCAGCTTCCCAGAGTTATTTCA
Seq A exon
AACTGCCTCTGCAGAGCACAGTTGTGTGGAGACAGGAAGTCAAGAACCAATGGCGATTTATTTCACCAGTGGGACCACAGGCTCTCCCAAGATGGCCCAACACTCTCAGAGCAGCCTGGGAATTGGGTATACCCTCTGTGGAAG
Seq C2 exon
GTATTGGCTAGACCTGAAGTCCACAGATATCATATGGAACATGTCTGACACTGGCTGGATCAAGGCTGCCATTGGCAGTGTGTTTTCCTCCTGGCTTCAAGGAGCCTGTGTCTTTGTGCATCGGATGGCCCAGTTTGACACCGACACTTTCCTGGAT
VastDB Features
Vast-tools module Information
Secondary ID
ENSBTAG00000046098-'2-3,'2-2,3-3=AN
Average complexity
A_S
Mappability confidence:
100%=100=100%
Protein Impact
Alternative protein isoforms (Ref)
No structure available
Features
Disorder rate (Iupred):
C1=0.000 A=0.000 C2=0.000
Domain overlap (PFAM):
C1:
PF0050123=AMP-binding=FE(16.6=100)
A:
PF0050123=AMP-binding=FE(11.6=100)
C2:
PF0050123=AMP-binding=FE(12.5=100)
Main Skipping Isoform:
NA
Other Inclusion Isoforms:
NA
Other Skipping Isoforms:
NA
Associated events
Conservation
Rat
(rn6)
No conservation detected
Chicken
(galGal3)
No conservation detected
Fruitfly
(dm6)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
CAGGAACAACCCAGCTGACAG
R:
TGATCCAGCCAGTGTCAGACA
Band lengths:
255-399
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]