MmuEX6013599 @ mm10
Exon Skipping
Gene
ENSMUSG00000047026 | Acsm4
Description
acyl-CoA synthetase medium-chain family member 4 [Source:MGI Symbol;Acc:MGI:2681844]
Coordinates
chr7:119698554-119705054:+
Coord C1 exon
chr7:119698554-119698761
Coord A exon
chr7:119703274-119703417
Coord C2 exon
chr7:119704898-119705054
Length
144 bp
Sequences
Splice sites
3' ss Seq
ATCTTGGGGTTCATCTGCAGATC
3' ss Score
8.18
5' ss Seq
AAGGTAGGA
5' ss Score
9.45
Exon sequences
Seq C1 exon
GGCTTGTATTCATGCCAGGAACGATCCAACTGACCAGAAAAGACATCCTCTACCGGCTGCAAGCATCCAAGGCCAAGTGCATTGTGGCTAGTGAGGAAGTGGCCCCCGCAGTGGACTCCATTGTATCAGAGTGTCCCAGCCTGAAGACTAAACTCCTGGTGTCTCCACACCACTGGGATGGATGGCTCAACTTTCAGGAGTTACTTCA
Seq A exon
ATCGGCCTCTGAAGAGCACAATTGTGTGGAGACGGGAAGTCAAGAACCAATGGCCATTTACTTCACCAGTGGGACCACAGGCTCCCCCAAGATGGCTCAGCACTCACAGGGCAGCCTTGGCATTGGGTATACCCTTTGTGGAAG
Seq C2 exon
GTACTGGCTGGACTTGACATCCTCAGATATCATGTGGAACATGTCAGACACTGGCTGGATCAAGGCTGCCATTGGTAGTGTGTTTTCTACATGGCTTCGAGGGGCCTGTGTTTTTGTGCACCGGATGGCCCAGTTCGACACTGATATCTTCCTAGAC
VastDB Features
Vast-tools module Information
Secondary ID
ENSMUSG00000047026-'1-12,'1-3,4-12=AN
Average complexity
A_S
Mappability confidence:
NA
Protein Impact
Alternative protein isoforms (Ref)
No structure available
Features
Disorder rate (Iupred):
C1=0.000 A=0.000 C2=0.000
Domain overlap (PFAM):
C1:
PF0050123=AMP-binding=FE(16.6=100)
A:
PF0050123=AMP-binding=FE(11.6=100)
C2:
PF0050123=AMP-binding=FE(12.5=100)
Main Skipping Isoform:
NA
Other Inclusion Isoforms:
NA
Other Skipping Isoforms:
NA
Associated events
Other assemblies
Conservation
Rat
(rn6)
No conservation detected
Chicken
(galGal3)
No conservation detected
Fruitfly
(dm6)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
GCCAAGTGCATTGTGGCTAGT
R:
AAAAACACAGGCCCCTCGAAG
Band lengths:
252-396
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]
SPECIAL DATASETS
- Ribosome-engaged transcriptomes of neuronal types
- Neural differentiation time course
- Muscular differentiation time course
- Spermatogenesis cell types
- Reprogramming of fibroblasts to iPSCs
- Hematopoietic precursors and cell types