GgaEX1003819 @ galGal4
Exon Skipping
Description
NA
Coordinates
chr14:14468883-14473447:-
Coord C1 exon
chr14:14473240-14473447
Coord A exon
chr14:14472706-14472849
Coord C2 exon
chr14:14468883-14469006
Length
144 bp
Sequences
Splice sites
3' ss Seq
TTGCATTCTGTGTTTTACAGAAA
3' ss Score
9.67
5' ss Seq
AAGGTATGA
5' ss Score
9.11
Exon sequences
Seq C1 exon
GAATTGTCTTAATTCCAGGAACATCCCAATTATCAGCCAAAGACATATTATATCGACTCCAGGCTTCGAAGGCCAAGTGCATCATTACCAACGACACTCTGGCTCCTGCAGTAGACTCAGTGGCATCTGAGTGCCAGTTTCTTAAAAACAAGCTGATGGTGTCCAAAGGCAGTAGGGAGGGATGGCTGAACTTCAATGAACTGTACAA
Seq A exon
AAACCAGCCTGCTGACCATTCCTGCGTCAAAACAATGATTCAAGATTCAATGATTATCTTCTTTACCAGTGGAACCACGGGTTCTCCAAAGATGACCGAACATTCCCAGGGCAGCCTTGGTTTTAGACCCCTGTTATGTGAAAG
Seq C2 exon
CTACAAATTCATGAATCTGAAGCACTGCATGAGTGGAGGGGAACCGCTAAACCCAGAAGTCATTGACCAGTGGAAAAGCAAGACAGGGCTAGACATCTATGAAGTATATGGCCAGACTGAAGCG
VastDB Features
Vast-tools module Information
Secondary ID
ENSGALG00000018875_MULTIEX1-16/24=15-19
Average complexity
C3
Mappability confidence:
100%=100=100%
Protein Impact
Alternative protein isoforms (Ref)
No structure available
Features
Disorder rate (Iupred):
C1=0.000 A=0.041 C2=0.000
Domain overlap (PFAM):
C1:
PF0050123=AMP-binding=FE(16.7=100)
A:
PF0050123=AMP-binding=FE(11.6=100)
C2:
PF0050123=AMP-binding=FE(9.9=100)
Main Skipping Isoform:
NA
Other Inclusion Isoforms:
NA
Other Skipping Isoforms:
NA
Associated events
Conservation
Fruitfly
(dm6)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
ATCGACTCCAGGCTTCGAAGG
R:
GCCCTGTCTTGCTTTTCCACT
Band lengths:
246-390
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]