RnoEX0006219 @ rn6
Exon Skipping
Gene
ENSRNOG00000042084 | Acsm2
Description
acyl-CoA synthetase medium-chain family member 2 [Source:RGD Symbol;Acc:708383]
Coordinates
chr1:189303722-189308598:+
Coord C1 exon
chr1:189303722-189303929
Coord A exon
chr1:189306405-189306479
Coord C2 exon
chr1:189308445-189308598
Length
75 bp
Sequences
Splice sites
3' ss Seq
GCTGCCATCTATTTCACTAGCGG
3' ss Score
5.09
5' ss Seq
TGGGTAAGT
5' ss Score
10.24
Exon sequences
Seq C1 exon
GTCTTGTTTTCATGCCTGGAACCACCCAGATGAAATCCACAGACATACTCTACAGGCTGCAATCATCCAAGGCCAGGGCCATTGTGGCTGGGGATGAAGTGGTTCAGGAAGTGGATGCTGTGGCCCCTGACTGCTCTTTTCTGAAAATCAAGTTGCTGGTGTCTGAAAAAAATCGAGAAGGATGGCTAAACTTCAAGGCACTGCTAAA
Seq A exon
CGGGACCAGTGGCCCTCCCAAGATGGCAGAGCACTCCCACTGCAGCCTGGGCCTCAAGGCCAAGATGGATGCTGG
Seq C2 exon
CTGGACAGGACTGGGACCTTCTGACACAATGTGGACCATCTCAGACACAGGCTGGATATTAAACATTTTAGGGTCATTTCTGGAACCTTGGGTATTGGGAACGTGCATATTTGTCCATCTTTTGCCAAAGTTTGATCCACAAACTGTTCTAAAG
VastDB Features
Vast-tools module Information
Secondary ID
ENSRNOG00000042084-'6-7,'6-6,7-7
Average complexity
S*
Mappability confidence:
100%=100=100%
Protein Impact
Alternative protein isoforms (Ref)
No structure available
Features
Disorder rate (Iupred):
C1=0.000 A=0.000 C2=0.000
Domain overlap (PFAM):
C1:
PF0050123=AMP-binding=FE(16.7=100)
A:
PF0050123=AMP-binding=FE(11.6=100)
C2:
PF0050123=AMP-binding=FE(12.3=100)
Main Skipping Isoform:
NA
Other Inclusion Isoforms:
NA
Other Skipping Isoforms:
NA
Associated events
Conservation
Human
(hg38)
No conservation detected
Mouse
(mm10)
No conservation detected
Fruitfly
(dm6)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
ACAGGCTGCAATCATCCAAGG
R:
TGTCAGAAGGTCCCAGTCCTG
Band lengths:
183-258
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]