BtaEX0002249 @ bosTau6
Exon Skipping
Gene
ENSBTAG00000019423 | ACSM2A
Description
Bos taurus acyl-CoA synthetase medium-chain family member 2A (ACSM2A), mRNA. [Source:RefSeq mRNA;Acc:NM_001101952]
Coordinates
chr25:18282693-18290181:+
Coord C1 exon
chr25:18282693-18282903
Coord A exon
chr25:18287202-18287345
Coord C2 exon
chr25:18290025-18290181
Length
144 bp
Sequences
Splice sites
3' ss Seq
CAATCTGTCACTGTTGTCAGGAA
3' ss Score
5.33
5' ss Seq
TGGGTAAGA
5' ss Score
8.91
Exon sequences
Seq C1 exon
GCTGGCAAGCGACCCCCTGGCCCAGCCCTGTGGTGGGTGAATGGCAACGGAGATGAGGTAATGTGGAACTTCAGCCAACTGAGTGAACTCAGTCAACAAACAGCCAACGTCTTCGCAGGGCCATGTGGTCTGCAGCGTGGGGACCGTGTGACAGTGGTGCTGCCCCGAGTGCCTGAGTGGTGGCTGGTGATCCTTGGCTGCATGCGGGCAG
Seq A exon
GAAAGCATCTACTACCCATTGCTTTGTGGAGACTGGGAGCCAAGAAGCAGCTGCCATCTACTTCACCAGTGGAACAAGTGGCCTTCCTAAGATGGCAGAACACTCCCACTCAAGCCTAGGAATAAAGGCCAAGATGGATGCTGG
Seq C2 exon
AAAATGGACAGACCTGCAAGCCTCTGACATAATATGGCCTATATCAGACACAGCTTGGATAGTGAACATTTTGGGCTCACTTCTGGAACCCTGGACGTCAGGAGCATGCACATTTATCCATCTCTTGCCAAAGTTTGATCCAGTGATCATTCTAAAG
VastDB Features
Vast-tools module Information
Secondary ID
ENSBTAG00000019423_MULTIEX1-2/6=C1-3
Average complexity
C3
Mappability confidence:
100%=100=100%
Protein Impact
Alternative protein isoforms (Ref)
No structure available
Features
Disorder rate (Iupred):
C1=0.014 A=0.000 C2=0.000
Domain overlap (PFAM):
C1:
PF0050123=AMP-binding=FE(22.2=100)
A:
PF0050123=AMP-binding=FE(15.2=100)
C2:
PF0050123=AMP-binding=FE(16.5=100)
Main Skipping Isoform:
NA
Other Inclusion Isoforms:
NA
Other Skipping Isoforms:
NA
Associated events
Conservation
Chicken
(galGal3)
No conservation detected
Fruitfly
(dm6)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
TGAACTCAGTCAACAAACAGCCA
R:
AAATGTGCATGCTCCTGACGT
Band lengths:
243-387
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]
SPECIAL DATASETS
- Pre-implantation embryo development