MmuEX6013579 @ mm9
Exon Skipping
Gene
ENSMUSG00000030945 | Acsm2
Description
acyl-CoA synthetase medium-chain family member 2 [Source:MGI Symbol;Acc:MGI:2385289]
Coordinates
chr7:126717066-126721749:+
Coord C1 exon
chr7:126717066-126717273
Coord A exon
chr7:126719124-126719270
Coord C2 exon
chr7:126721596-126721749
Length
147 bp
Sequences
Splice sites
3' ss Seq
TGACTGTCTGGTTCCTGTAGAGA
3' ss Score
7.99
5' ss Seq
CAGGTAAGC
5' ss Score
9.88
Exon sequences
Seq C1 exon
GCCTTGTTTTCATGCCTGGGACCATCCAGATGAGATCCTCAGACATACTCTACAGGCTGCAGGCATCCAAGGCCAGGGCCATTGTGGCTGGGGACGAAGTAGCTCAGGAAGTGGATGCTGTGGCCCCTGACTGCTCTTTTCTGAAAATCAAGTTGCTGGTGTCTGAAAACAGTCGAGAAGGATGGCTAAACTTCAAGGCATTGCTAAA
Seq A exon
AGAGGCATCCACCATTCATCAGTGTGTGGAGACAGAAAGCCGAGAATCAGCAGCCATCTACTTCACTAGTGGGACCAGTGGCCCTCCCAAGATGGCAGAACACTCCCACTGCAGCCTGGGCATCAAGGCCAAGATGGATGCTGCCAG
Seq C2 exon
CTGGACAGGCCTGAGTACTTCTGACATAATATGGACCATCTCAGACACGGCTTGGATAATGAACATTTTAGGAGCGTTTCTGGAACCTTGGGTATTGGGAGCATGCATATTTGTCCATCTTTTGCCAAAGTTTGATTCACAAACTGTTCTAAAG
VastDB Features
Vast-tools module Information
Secondary ID
ENSMUSG00000030945-'5-8,'5-7,6-8=AN
Average complexity
A_S
Mappability confidence:
100%=100=100%
Protein Impact
Alternative protein isoforms (Ref)
No structure available
Features
Disorder rate (Iupred):
C1=0.000 A=0.000 C2=0.000
Domain overlap (PFAM):
C1:
PF0050123=AMP-binding=FE(16.7=100),PF148561=Hce2=PU(5.3=5.7)
A:
PF0050123=AMP-binding=FE(11.8=100),PF148561=Hce2=FE(65.3=100)
C2:
PF0050123=AMP-binding=FE(12.3=100),PF148561=Hce2=PD(28.0=40.4)
Other Skipping Isoforms:
NA
Associated events
Other assemblies
Conservation
Chicken
(galGal3)
No conservation detected
Fruitfly
(dm6)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
TTTTCATGCCTGGGACCATCC
R:
CAAGCCGTGTCTGAGATGGTC
Band lengths:
256-403
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]
Other AS DBs: