GgaEX1003823 @ galGal3
Exon Skipping
Description
NA
Coordinates
chr14:15241048-15243456:-
Coord C1 exon
chr14:15243249-15243456
Coord A exon
chr14:15242253-15242396
Coord C2 exon
chr14:15241048-15241204
Length
144 bp
Sequences
Splice sites
3' ss Seq
ATATGCTATTTCTTCTGAAGGGT
3' ss Score
7.1
5' ss Seq
CAGGTATTG
5' ss Score
8.35
Exon sequences
Seq C1 exon
GAATTGTCTTTATTCCAGGAACGTCCCAATTAACAGCCAAAGATATTTTATACCGCCTTCAGGCTTCAAAGGCCAAGTGCATGATTACCAATGATACTCTGGCACCTGTAGTGGAATCTATCTTGCCTGACTGCCAGTTTCTGAAAACTAAACTAATTGTAGCCAAAGGGAACAGAGATGGGTGGCTCAATCTCAAAGAACTCTTTGC
Seq A exon
GGTGACATCTGCTGACCACAAATGCGTTAAGACAAGAAATGATGACCCAATGCTCATCTATTTTACTAGTGGAAGTACAGGCTCTCCAAAAATGGTGGTGCAGTCCCACAGCAGTTACGGCATCGGATTTGCAACCAGTAGCAG
Seq C2 exon
GCACTGGATGAACTTGACTCCCTCAGATATAATGTGGAATACCTCTGATACTGGCTGGGTAAAGGCAGCTTGGAGCAGCGTATTTGCACCATGGATCAGTGGATCTTGTGTTTTTGTTCACAACATGCCACAGTTTAAACCAACAGTCATTGCAGAA
VastDB Features
Vast-tools module Information
Secondary ID
ENSGALG00000001961-'2-3,'2-2,3-3=AN
Average complexity
A_S
Mappability confidence:
100%=100=100%
Protein Impact
Alternative protein isoforms (Ref)
No structure available
Features
Disorder rate (Iupred):
C1=0.000 A=0.000 C2=0.000
Domain overlap (PFAM):
C1:
PF0050123=AMP-binding=FE(16.6=100)
A:
PF0050123=AMP-binding=FE(11.6=100)
C2:
PF0050123=AMP-binding=FE(12.5=100)
Main Skipping Isoform:
NA
Other Inclusion Isoforms:
NA
Other Skipping Isoforms:
NA
Associated events
Other assemblies
Conservation
Zebrafish
(danRer10)
No conservation detected
Fruitfly
(dm6)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
GCTTCAAAGGCCAAGTGCATG
R:
GATCCACTGATCCATGGTGCA
Band lengths:
251-395
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]