BtaEX0002259 @ bosTau6
Exon Skipping
Gene
ENSBTAG00000037449 | ACSM5
Description
acyl-CoA synthetase medium-chain family member 5 [Source:HGNC Symbol;Acc:HGNC:26060]
Coordinates
chr25:18216714-18224664:+
Coord C1 exon
chr25:18216714-18216921
Coord A exon
chr25:18219439-18219582
Coord C2 exon
chr25:18224585-18224664
Length
144 bp
Sequences
Splice sites
3' ss Seq
AATATTTTTATATTTTACAGGGA
3' ss Score
8.49
5' ss Seq
GAGGTACCA
5' ss Score
6.43
Exon sequences
Seq C1 exon
GGGCCATCATGATTCCTGGCATCTCTCAGCTGACAGAAAAAGACCTCAAATTTCGGCTGCAGGCATCCAGAGCCAAGGCCATTATCACCAGTGACTCCTTGGCTCCACGGGTGGATGCCATTAGCGCCGACTGCCCTTCCCTTCAAACCAAGCTGCTTGTGTCAGACAGCTATCGGCCAGGCTGGATGAACTTCAGGGAACTCCTCTG
Seq A exon
GGAGGCAGCCACAGAACACAACTGTGCCAGGACCAGGGGTCAAGACCCAGTGGCCATCTACTTCACAAGTGGCACGACTGGGACCCCCAAGATGGTCGAGCACACCCAGGCCAGCTACGGACTGGGTTTTGTGGCCAGTGGGAG
Seq C2 exon
ACTCTGTCCAGGTTCCCGATCACCACCCTCTGTTGTGTCCCCACCATGTTCCGTCTGCTTGTGCAGGAGGACCTAACCAG
VastDB Features
Vast-tools module Information
Secondary ID
ENSBTAG00000037449_MULTIEX1-4/10=3-6
Average complexity
C3
Mappability confidence:
100%=100=100%
Protein Impact
Alternative protein isoforms (Ref)
No structure available
Features
Disorder rate (Iupred):
C1=0.000 A=0.000 C2=0.000
Domain overlap (PFAM):
C1:
PF0050123=AMP-binding=FE(16.6=100)
A:
PF0050123=AMP-binding=FE(11.6=100)
C2:
PF0050123=AMP-binding=FE(6.3=100)
Main Skipping Isoform:
NA
Other Inclusion Isoforms:
NA
Other Skipping Isoforms:
NA
Associated events
Conservation
Fruitfly
(dm6)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
TTCCTGGCATCTCTCAGCTGA
R:
ACAAGCAGACGGAACATGGTG
Band lengths:
258-402
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]
SPECIAL DATASETS
- Pre-implantation embryo development