RnoEX6004588 @ rn6
Exon Skipping
Gene
ENSRNOG00000031211 | Acsm5
Description
acyl-CoA synthetase medium-chain family member 5 [Source:RGD Symbol;Acc:1309578]
Coordinates
chr1:189249503-189252250:+
Coord C1 exon
chr1:189249503-189249710
Coord A exon
chr1:189251577-189251720
Coord C2 exon
chr1:189252097-189252250
Length
144 bp
Sequences
Splice sites
3' ss Seq
AGTATCCTTGCATTCTCCAGAGT
3' ss Score
4.96
5' ss Seq
AAGGTATTG
5' ss Score
7.76
Exon sequences
Seq C1 exon
GTGTGGTCATGATCCCAGGCATTTCCCAGCTGACACAGAAGGATCTCAAGTACCGGCTACAGGCTGCCAGGGTCAAATCCATCATCACCAGTGATGCCCTAGCTCCTCACGTGGATGCCATCAGTGCTGACTGCCCCTCCCTTCAAAGCAGGCTTCTGGTGTCTGATACCAGTCGTCCAGGCTGGATCAATTTCCGGGAACTCCTGAG
Seq A exon
AGTGGCATCTCCAGAACACAACTGCCTGAGAACCAGAAGTGGAGATTCAATGGCCATCTACTTCACCAGTGGAACCACGGGGACCCCCAAGATGGTGGAACATTCCCAGTGCAGCTATGGACTGGGTTTTGTGGCCAGTGGAAG
Seq C2 exon
GAGGTTGATGGCCTTGACTGAATCCGACATATTCTGGAACACAACTGACACTGGTTGGGTGAAAGCAGCCTGGACTCTCTTCTCTGCCTGGGCCAATGGCGCTTGCGTTTTTGTGCATGAGCTGCCCCAAGTTGATGCCCAAACTATTCTAAAT
VastDB Features
Vast-tools module Information
Secondary ID
ENSRNOG00000031211-'10-12,'10-11,11-12=AN
Average complexity
A_C1
Mappability confidence:
100%=100=100%
Protein Impact
Alternative protein isoforms (Ref)
No structure available
Features
Disorder rate (Iupred):
C1=0.000 A=0.000 C2=0.000
Domain overlap (PFAM):
C1:
PF0050123=AMP-binding=FE(16.7=100)
A:
PF0050123=AMP-binding=FE(11.6=100)
C2:
PF0050123=AMP-binding=FE(12.3=100)
Main Skipping Isoform:
NA
Other Skipping Isoforms:
NA
Associated events
Conservation
Fruitfly
(dm6)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
TTCCCAGCTGACACAGAAGGA
R:
GCTTTCACCCAACCAGTGTCA
Band lengths:
252-396
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]