HsaEX6046461 @ hg38
Exon Skipping
Gene
ENSG00000221988 | PPT2
Description
palmitoyl-protein thioesterase 2 [Source:HGNC Symbol;Acc:HGNC:9326]
Coordinates
chr6:32153441-32157924:+
Coord C1 exon
chr6:32153441-32155978
Coord A exon
chr6:32157637-32157720
Coord C2 exon
chr6:32157840-32157924
Length
84 bp
Sequences
Splice sites
3' ss Seq
TAACTGCTGTTTGTACCCAGATC
3' ss Score
7.94
5' ss Seq
CAGGTGAGA
5' ss Score
9.22
Exon sequences
Seq C1 exon
TTCGGGCTCAGTCACTTATATGATGTGTGACCTTTTGGCACAGGGTGTGCCTGCCTTCTGTAAGCCTCAGTCTCCTTTGTGTACAGTGTGTGTCTGTGTGTGTCTCTGTGTGTGTGTGTGTGTGTGTGTGTGTGTGTGTGGTGGGGGTGGGGGGTGCTGCTGGCTTTGCTGTCCTTAAGTGCCTGCCCAATGTGGTGTTCTGCTTACAGGGGGCCTTGTGTGCCGGGCTCTGCTTTCTGTCATGGATGATCACAACGTGGATTCTTTCATCTCCCTCTCCTCTCCACAGATGGGACAGTATGGAGGTGAGTGGGCACTAGACTCCATAGAATGCCCTGAGTTTTGGGGGAACAGAGGTTTATGGTCACTTAGCATTGCCATTCGCTTGCCAGACACGGACTACTTGAAGTGGCTGTTCCCCACCTCCATGCGGTCTAACCTCTATCGGATCTGCTATAGCCCCTGGGGCCAGGAATTCTCCATCTGCAACTACTGGCATG
Seq A exon
ATCCCCACCACGATGACTTGTACCTCAATGCCAGCAGCTTCCTGGCCCTGATCAATGGGGAAAGAGACCATCCCAATGCCACAG
Seq C2 exon
TATGGCGGAAGAACTTTCTGCGTGTGGGCCACCTGGTGCTGATTGGGGGCCCTGATGATGGTGTTATTACTCCCTGGCAGTCCAG
VastDB Features
Vast-tools module Information
Secondary ID
ENSG00000221988-'8-16,'8-15,9-16=AN
Average complexity
A_C3
Mappability confidence:
100%=100=100%
Protein Impact
Alternative protein isoforms (Ref)
No structure available
Features
Disorder rate (Iupred):
C1=0.000 A=0.000 C2=0.000
Domain overlap (PFAM):
C1:
PF126972=Abhydrolase_6=PD(21.9=81.1)
A:
PF0208910=Palm_thioest=FE(10.4=100)
C2:
PF0208910=Palm_thioest=PD(32.9=93.1)
Other Inclusion Isoforms:
Other Skipping Isoforms:
NA
Associated events
Other assemblies
Conservation
Rat
(rn6)
No conservation detected
Chicken
(galGal4)
No conservation detected
Chicken
(galGal3)
No conservation detected
Fruitfly
(dm6)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
TGCCAGACACGGACTACTTGA
R:
TAACACCATCATCAGGGCCCC
Band lengths:
180-264
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]
SPECIAL DATASETS
- Autistic and control brains