MmuEX6077145 @ mm10
Exon Skipping
Gene
ENSMUSG00000015474 | Ppt2
Description
palmitoyl-protein thioesterase 2 [Source:MGI Symbol;Acc:MGI:1860075]
Coordinates
chr17:34622851-34625744:-
Coord C1 exon
chr17:34625637-34625744
Coord A exon
chr17:34623031-34623114
Coord C2 exon
chr17:34622851-34622935
Length
84 bp
Sequences
Splice sites
3' ss Seq
AACTGTTGTTTTTTACTCAGATC
3' ss Score
7.22
5' ss Seq
CTGGTAAGA
5' ss Score
9.45
Exon sequences
Seq C1 exon
ACACGGACTATTTGAAATGGCTCTTCCCCACGTCCATGCGGTCTAACCTCTATCGGGTCTGCTATAGTCCTTGGGGCCAGGAATTTTCCATTTGCAACTACTGGCACG
Seq A exon
ATCCTCACCACGATGACTTGTACCTCAATGCCAGCAGCTTTCTGGCCCTCATCAATGGGGAAAGAGACCATCCCAATGCCACTG
Seq C2 exon
CATGGCGGAAGAACTTCCTTCGCGTGGGCCGTCTGGTGCTGATTGGGGGTCCTGATGATGGCGTTATCACTCCCTGGCAATCTAG
VastDB Features
Vast-tools module Information
Secondary ID
ENSMUSG00000015474-'12-15,'12-14,14-15=AN
Average complexity
A_C3
Mappability confidence:
100%=100=100%
Protein Impact
Alternative protein isoforms (Ref)
No structure available
Features
Disorder rate (Iupred):
C1=0.000 A=0.000 C2=0.000
Domain overlap (PFAM):
C1:
PF0208910=Palm_thioest=FE(13.6=100)
A:
PF0208910=Palm_thioest=FE(10.6=100)
C2:
PF0208910=Palm_thioest=PD(13.3=93.1)
Main Skipping Isoform:
NA
Other Inclusion Isoforms:
Other Skipping Isoforms:
NA
Associated events
Other assemblies
Conservation
Chicken
(galGal4)
No conservation detected
Chicken
(galGal3)
No conservation detected
Fruitfly
(dm6)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
TTGAAATGGCTCTTCCCCACG
R:
ATTGCCAGGGAGTGATAACGC
Band lengths:
178-262
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]
SPECIAL DATASETS
- Ribosome-engaged transcriptomes of neuronal types
- Neural differentiation time course
- Muscular differentiation time course
- Spermatogenesis cell types
- Reprogramming of fibroblasts to iPSCs
- Hematopoietic precursors and cell types