HsaEX6047457 @ hg38
Exon Skipping
Gene
ENSG00000137225 | CAPN11
Description
calpain 11 [Source:HGNC Symbol;Acc:HGNC:1478]
Coordinates
chr6:44169281-44172349:+
Coord C1 exon
chr6:44169281-44169531
Coord A exon
chr6:44169906-44169975
Coord C2 exon
chr6:44172302-44172349
Length
70 bp
Sequences
Splice sites
3' ss Seq
CCTTTATTCCTTCACTGCAGGAT
3' ss Score
10.53
5' ss Seq
TCGGTGAGT
5' ss Score
11.11
Exon sequences
Seq C1 exon
AGCCCACTTTTACTGATACGGGAATGGTGGCTCACATAAACAACAGCCGGCTCAAGGCCAAGGGCGTGGGCCAGCACGACAACGCCCAGAACTTTGGTAACCAGAGCTTTGAGGAGCTGCGAGCAGCCTGTCTAAGAAAGGGGGAGCTCTTCGAGGACCCCTTATTCCCTGCTGAACCCAGCTCACTGGGCTTCAAGGACCTGGGCCCCAACTCCAAAAATGTGCAGAACATCTCCTGGCAGCGGCCCAAG
Seq A exon
GATATCATAAACAACCCTCTATTCATCATGGATGGGATTTCTCCAACAGACATCTGCCAGGGGATCCTCG
Seq C2 exon
GGGACTGCTGGCTGCTGGCTGCCATCGGCTCCCTTACCACCTGCCCCA
VastDB Features
Vast-tools module Information
Secondary ID
ENSG00000137225-'5-7,'5-6,7-7=AN
Average complexity
A_S
Mappability confidence:
100%=100=100%
Protein Impact
ORF disruption upon sequence exclusion
No structure available
Features
Disorder rate (Iupred):
C1=0.274 A=0.000 C2=0.000
Domain overlap (PFAM):
C1:
PF0064816=Peptidase_C2=PU(11.3=40.5)
A:
PF0064816=Peptidase_C2=FE(31.1=100)
C2:
PF0064816=Peptidase_C2=PD(20.3=88.2)
Main Skipping Isoform:
NA
Other Skipping Isoforms:
NA
Associated events
Other assemblies
Conservation
Fruitfly
(dm6)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
GCAGCCTGTCTAAGAAAGGGG
R:
AGGTGGTAAGGGAGCCGATG
Band lengths:
171-241
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]
SPECIAL DATASETS
- Autistic and control brains