HsaEX6048067 @ hg19
Exon Skipping
Gene
ENSG00000082293 | COL19A1
Description
collagen, type XIX, alpha 1 [Source:HGNC Symbol;Acc:2196]
Coordinates
chr6:70647930-70672762:+
Coord C1 exon
chr6:70647930-70647992
Coord A exon
chr6:70669888-70669932
Coord C2 exon
chr6:70672718-70672762
Length
45 bp
Sequences
Splice sites
3' ss Seq
ATTCTGTGTACTTCTTTTAGGGT
3' ss Score
9.52
5' ss Seq
AAGGTAAAG
5' ss Score
9.06
Exon sequences
Seq C1 exon
GGAGAAGCAGGATTACCAGGAGCTCCGGGTTCACCTGGGCAGAAAGGGCATAAAGGAGAGCCG
Seq A exon
GGTGAAAATGGTTTACATGGTGCTCCAGGATTCCCTGGTCAAAAG
Seq C2 exon
GGAGAGCAAGGTTTTGAAGGCAGCAAAGGAGAAACTGGTGAAAAG
VastDB Features
Vast-tools module Information
Secondary ID
ENSG00000082293-'12-13,'12-12,13-13=AN
Average complexity
A_S
Mappability confidence:
100%=100=100%
Protein Impact
Alternative protein isoforms (Ref)
No structure available
Features
Disorder rate (Iupred):
C1=1.000 A=1.000 C2=1.000
Domain overlap (PFAM):
C1:
PF0139113=Collagen=FE(32.3=100)
A:
PF0139113=Collagen=FE(22.6=100)
C2:
PF0139113=Collagen=FE(22.6=100),PF0139113=Collagen=PU(16.9=73.3)
Main Skipping Isoform:
NA
Other Inclusion Isoforms:
NA
Other Skipping Isoforms:
NA
Associated events
Other assemblies
Conservation
Chicken
(galGal4)
No conservation detected
Chicken
(galGal3)
No conservation detected
Zebrafish
(danRer10)
No conservation detected
Fruitfly
(dm6)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
GGAGAAGCAGGATTACCAGGAG
R:
CTTTTCACCAGTTTCTCCTTTGCTG
Band lengths:
108-153
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]
SPECIAL DATASETS
- Autistic and control brains
Other AS DBs:
FasterDB (Includes CLIP-seq data)
AS-ALPS (AS-induced ALteration of Protein Structure, links to PINs)
APPRIS (Selection of principal isoform)
DEU primates (Only for human)