MmuEX0012178 @ mm9
Exon Skipping
Gene
ENSMUSG00000026141 | Col19a1
Description
collagen, type XIX, alpha 1 [Source:MGI Symbol;Acc:MGI:1095415]
Coordinates
chr1:24468315-24532505:-
Coord C1 exon
chr1:24532443-24532505
Coord A exon
chr1:24517682-24517726
Coord C2 exon
chr1:24468315-24468368
Length
45 bp
Sequences
Splice sites
3' ss Seq
ATTTTGGTTACTCTTTTTAGGGT
3' ss Score
8.05
5' ss Seq
AAGGTAATG
5' ss Score
8.99
Exon sequences
Seq C1 exon
GAGGAAGCAGGATTACCAGGAACTCTCAGATCCATTGGACATAAGGGCGACAAAGGAGAGCCG
Seq A exon
GGTGAACATGGCTTAGATGGTACTCCAGGATTACCTGGTCAAAAG
Seq C2 exon
GGTGAACCAGGAGCCAAAGGAGACTCTGGTCTGGATGGCCTCAATGGACAAGAT
VastDB Features
Vast-tools module Information
Secondary ID
ENSMUSG00000026141_MULTIEX1-6/8=5-8
Average complexity
C3
Mappability confidence:
100%=100=100%
Protein Impact
Alternative protein isoforms (Ref)
No structure available
Features
Disorder rate (Iupred):
C1=0.905 A=1.000 C2=1.000
Domain overlap (PFAM):
C1:
PF0139113=Collagen=FE(33.9=100)
A:
PF0139113=Collagen=FE(23.7=100)
C2:
PF0139113=Collagen=PD(10.2=33.3),PF0139113=Collagen=FE(27.4=100)
Main Skipping Isoform:
NA
Other Skipping Isoforms:
NA
Associated events
Other assemblies
Conservation
Chicken
(galGal4)
No conservation detected
Chicken
(galGal3)
No conservation detected
Zebrafish
(danRer10)
No conservation detected
Fruitfly
(dm6)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
GAGGAAGCAGGATTACCAGGA
R:
TCTTGTCCATTGAGGCCATCC
Band lengths:
116-161
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]
SPECIAL DATASETS
- Pre-implantation embryo development
- Neural differentiation time course
- Muscular differentiation time course
- Spermatogenesis cell types
- Reprogramming of fibroblasts to iPSCs
- Hematopoietic precursors and cell types
Other AS DBs: