HsaEX6054654 @ hg19
Exon Skipping
Gene
ENSG00000154814 | OXNAD1
Description
oxidoreductase NAD-binding domain containing 1 [Source:HGNC Symbol;Acc:25128]
Coordinates
chr3:16306706-16312578:+
Coord C1 exon
chr3:16306706-16307012
Coord A exon
chr3:16310633-16310782
Coord C2 exon
chr3:16312452-16312578
Length
150 bp
Sequences
Splice sites
3' ss Seq
TGTTGTTTGTGCCATTGCAGGAA
3' ss Score
9.09
5' ss Seq
AAGGTAAGT
5' ss Score
11
Exon sequences
Seq C1 exon
CTGGGACCGCGGAGTATTCCAGGCGCCTGCAACTAAACGTGGCCGGGTCTGCAAGCTAGGTGCCAGCGGGGAAAGTTTCCCTGCTTCTTATCGTCTGCTTTAACGCCTTAAATAGCCCGCTGAAGGCTGCAGCAGGTGCTAGGTAGCAGCCTCCCGGCCCTCGGGAAAGGCGGGGTGGGGAGGCGAGAGCAGCTTAGCCTCCTCGACCTCCCTTCCTGGTGACGGACGAACAGTTCCCGTAGAATTTCGCTTCACCGAGTGACCTTGAGCCCAGGGCGACGGTCAGCTTGTTAATTCCTGGCTGCAG
Seq A exon
GAACTTTGTGAGAATTTTAATGCATGGAAAAGCTGTCCATGTTCCAACTGCTGTACATCCAAAAGTCTCAGTGTAATAGCAGGACCAAAATATTCTGTCAATCAGCTGACCATATACTTAATGACTCCTAAAATCTCGTGGACTTCTAAG
Seq C2 exon
AAAGCGCCATGGCCTGTGCTGCTGTTATGATTCCTGGGTTGTTGCGGTGCTCTGTTGGAGCCATCCGTATTGAGGCTGCGTCACTGAGATTGACACTCAGCACTTTGCGCCACCTTACTCTAACCAG
VastDB Features
Vast-tools module Information
Secondary ID
ENSG00000154814-'0-5,'0-3,2-5=AN
Average complexity
A_C1
Mappability confidence:
100%=100=100%
Protein Impact
5' UTR
No structure available
Features
Disorder rate (Iupred):
C1=NA A=NA C2=0.000
Domain overlap (PFAM):
C1:
NA
A:
NO
C2:
PF063668=FlhE=PU(65.2=75.0)
Main Skipping Isoform:
NA
Other Inclusion Isoforms:
NA
Other Skipping Isoforms:
NA
Associated events
Other assemblies
Conservation
Rat
(rn6)
No conservation detected
Chicken
(galGal4)
No conservation detected
Chicken
(galGal3)
No conservation detected
Zebrafish
(danRer10)
No conservation detected
Fruitfly
(dm6)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
CGCCTTAAATAGCCCGCTGAA
R:
CCGCAACAACCCAGGAATCAT
Band lengths:
251-401
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]
SPECIAL DATASETS
- Autistic and control brains
Other AS DBs:
FasterDB (Includes CLIP-seq data)
AS-ALPS (AS-induced ALteration of Protein Structure, links to PINs)
APPRIS (Selection of principal isoform)
DEU primates (Only for human)