BtaEX0025596 @ bosTau6
Exon Skipping
Gene
ENSBTAG00000004891 | OXNAD1
Description
Bos taurus oxidoreductase NAD-binding domain containing 1 (OXNAD1), mRNA. [Source:RefSeq mRNA;Acc:NM_001035090]
Coordinates
chr1:155003594-155035442:+
Coord C1 exon
chr1:155003594-155010352
Coord A exon
chr1:155017657-155017805
Coord C2 exon
chr1:155035336-155035442
Length
149 bp
Sequences
Splice sites
3' ss Seq
TGTTGTCTCTGCTGTTGAAGGAC
3' ss Score
6.48
5' ss Seq
GAAGTAAGT
5' ss Score
9.82
Exon sequences
Seq C1 exon
CATGGAGATGGCGGCTCTAGGGGGCGGAGACACGGGCGAATAGGACTCGCGGCTCGGGGTCGATCGAGCGTCGCTCCGCCCATCGGGCGACAGCAACCAATGGCATGTGGGTTTCTCTCACGCGCCTGTGCGTCACTTCGGGGACGCCGGAAGCTCTCCAGAGCCGGGGCGGAGCTTGGCGCTGCGCAAGGGCCGGGTCGGCGCGGGGGTGGCGGCGGTGTGGAGACTCCCGATTGAGGCGTAGTGTCCCGTGTCTCACGTCCGTGGGCCTCAGGCCTTAAGCAGACTCCGTAGGAGGCCCCGGTCGGCCTAGGTAGCGTCAGCCCGGCCCTTGGCGCCGCTGGCGGAAAGCGCTTTGCGGGGTGAGAGGCAGCGGCGGGAACTGCTCAGCCCCCTGGACCTCCCCGGTGAGGGACGGAAAGCTGAGGTCTTGATTCACCGAGTGACTTTAAGCTCCGAGCGGCGCGTGGCTTGTGATCGGGCCGCGCTCGGCTGTCCAG
Seq A exon
GACCTCGGTGAGAGTTTCAGTGGATGGTGCTGTTTCTGCTCCAGCCCGTGTGTGTGCCAAAAGTCTCAGTGTGATTCCAGGACCAGAATATTGGATGTCAGCCAGCCAGCTGTACACTAACGGCTCCTAAACTCTCATGGACCTCTGAA
Seq C2 exon
GTCGTTTCGGCAGCCAAGGTGTGTGGAGTGGCTAGCGAGTCCCCATCGGTGAAGAGGCTCTGCCTGCTCGTCGCCGATAAAGACTTTTCTTTTAAGGCCGGCCAGTG
VastDB Features
Vast-tools module Information
Secondary ID
ENSBTAG00000004891_MULTIEX1-1/6=C1-5
Average complexity
C3
Mappability confidence:
100%=100=100%
Protein Impact
5' UTR
No structure available
Features
Disorder rate (Iupred):
C1=NA A=NA C2=0.000
Domain overlap (PFAM):
C1:
NA
A:
NA
C2:
NO
Main Inclusion Isoform:
NA
Other Inclusion Isoforms:
NA
Other Skipping Isoforms:
NA
Associated events
Conservation
Mouse
(mm10)
No conservation detected
Chicken
(galGal4)
No conservation detected
Chicken
(galGal3)
No conservation detected
Zebrafish
(danRer10)
No conservation detected
Fruitfly
(dm6)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
AGGCCTTAAGCAGACTCCGTA
R:
CACTCCACACACCTTGGCTG
Band lengths:
258-407
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]
SPECIAL DATASETS
- Pre-implantation embryo development