RnoEX0062754 @ rn6
Exon Skipping
Gene
ENSRNOG00000019760 | Oxnad1
Description
oxidoreductase NAD-binding domain containing 1 [Source:RGD Symbol;Acc:1311534]
Coordinates
chr16:8207223-8212652:+
Coord C1 exon
chr16:8207223-8207902
Coord A exon
chr16:8211418-8211524
Coord C2 exon
chr16:8212518-8212652
Length
107 bp
Sequences
Splice sites
3' ss Seq
TTACTGTCTTCGTACTGCAGGAA
3' ss Score
9.62
5' ss Seq
AAAGTAAGT
5' ss Score
9.72
Exon sequences
Seq C1 exon
CTAGCTGCGCCCAGGCAGGGTAGGCCCGGGCGGCCCTCCCTGGAGCAGGAACAGTCACTTCCGGACGCACAGGCGATGACGTAACTTCCACCGCCGCGGCCAAATGGGTGACCTGGTCGCGGTCACCATGGAGATAGCGCTGGAAAGATGGCGCTTCCTGCGCAGCAGGGTTGCGCAGTTCTACGTCCACGGCTGCCAACGACCAATAGGGTGAAGGGCTCCCGCACATGGGGGCTACGTCACTTCTGGGCCCGGGGAGTTTGGGCTTGGGATATAAACGAGTGTTTTATGCTGGTGGTGTCGTGTCCTCCATCGCTGACTTCAGAGAACATTTAAAGAGTTGATAGAGGCTACTCCCTCTTAAGAGGGGGTCAGTGAGACTCAGGGAGCCACACAGCGTCCTCTCCAGTCCTCCTCGACACACAGCGCTCCTGCAGTAGCGTTTCAGGCGACCTTGAGCTCTGAGTGACGCCTGGCCTGTTATGAGTTCCTGCCTGCAG
Seq A exon
GAACTTTGTGGGAACTTCTCTGTGTTCTGGCTGGTGCGAATCTAGAGGTCTCAGTACAGCACTGTGTCAGCCAGCTGAGGACTCCCAGAACCTTATGGGTTTCTAAA
Seq C2 exon
TTCCATTTGCCCAGGCAGCACCATGGCCCATGTCTTGATTCCTGGGTTGTCTCGAGGCTCTGTGGGAGCCATCTGCACTCAGGCTGCTTCGTGGGCACTGCCTACCAGCACTCTGCGTTCCCTTACCTTAGCCAG
VastDB Features
Vast-tools module Information
Secondary ID
ENSRNOG00000019760_CASSETTE1
Average complexity
S
Mappability confidence:
100%=100=100%
Protein Impact
5' UTR
No structure available
Features
Disorder rate (Iupred):
C1=0.482 A=NA C2=0.000
Domain overlap (PFAM):
C1:
NO
A:
NA
C2:
NO
Main Inclusion Isoform:
NA
Other Inclusion Isoforms:
NA
Other Skipping Isoforms:
NA
Associated events
Conservation
Human
(hg19)
No conservation detected
Mouse
(mm9)
No conservation detected
Chicken
(galGal4)
No conservation detected
Chicken
(galGal3)
No conservation detected
Zebrafish
(danRer10)
No conservation detected
Fruitfly
(dm6)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
TGTCCTCCATCGCTGACTTCA
R:
CCAGGAATCAAGACATGGGCC
Band lengths:
242-349
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]