HsaEX6057630 @ hg19
Exon Skipping
Gene
ENSG00000176040 | TMPRSS7
Description
transmembrane protease, serine 7 [Source:HGNC Symbol;Acc:30846]
Coordinates
chr3:111793143-111795991:+
Coord C1 exon
chr3:111793143-111793259
Coord A exon
chr3:111794168-111794339
Coord C2 exon
chr3:111795723-111795991
Length
172 bp
Sequences
Splice sites
3' ss Seq
ATGCCCTTTCTCCACCAAAGCCT
3' ss Score
4.4
5' ss Seq
CAGGTAGGG
5' ss Score
9.46
Exon sequences
Seq C1 exon
GTATTCCATGCAACAACAGAACTTTTAAGTGTGGCAATGATATTTGCTTTAGGAAACAAAATGCAAAATGTGATGGGACAGTGGATTGTCCAGATGGAAGTGATGAAGAAGGCTGCA
Seq A exon
CCTGCAGCAGGAGTTCCTCCGCCCTTCACCGCATCATCGGAGGCACAGACACCCTGGAGGGGGGTTGGCCGTGGCAGGTCAGCCTCCACTTTGTTGGATCTGCCTACTGTGGTGCCTCAGTCATCTCCAGGGAGTGGCTTCTTTCTGCAGCCCACTGTTTTCATGGAAACAG
Seq C2 exon
GCTGTCAGATCCCACACCATGGACTGCACACCTCGGGATGTATGTTCAGGGGAATGCCAAGTTTGTCTCCCCGGTGAGAAGAATTGTGGTCCACGAGTACTATAACAGTCAGACTTTTGATTATGATATTGCTTTGCTACAGCTCAGTATTGCCTGGCCTGAGACCCTGAAACAGCTCATTCAGCCAATATGCATTCCTCCCACTGGTCAGAGAGTTCGCAGTGGGGAGAAGTGCTGGGTAACTGGCTGGGGGCGAAGACACGAAGCAG
VastDB Features
Vast-tools module Information
Secondary ID
ENSG00000176040-'19-25,'19-24,20-25=AN
Average complexity
A_C1
Mappability confidence:
100%=100=100%
Protein Impact
ORF disruption upon sequence exclusion
No structure available
Features
Disorder rate (Iupred):
C1=0.000 A=0.000 C2=0.000
Domain overlap (PFAM):
C1:
PF0005713=Ldl_recept_a=WD(100=92.5)
A:
PF0008921=Trypsin=PU(20.0=79.3)
C2:
PF0008921=Trypsin=FE(39.1=100)
Main Skipping Isoform:
NA
Other Skipping Isoforms:
NA
Associated events
Other assemblies
Conservation
Fruitfly
(dm6)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
GGAAGTGATGAAGAAGGCTGCA
R:
ACTGCGAACTCTCTGACCAGT
Band lengths:
245-417
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]
SPECIAL DATASETS
- Autistic and control brains
Other AS DBs:
FasterDB (Includes CLIP-seq data)
AS-ALPS (AS-induced ALteration of Protein Structure, links to PINs)
APPRIS (Selection of principal isoform)
DEU primates (Only for human)