RnoEX6056991 @ rn6
Exon Skipping
Gene
ENSRNOG00000002145 | Tmprss7
Description
transmembrane serine protease 7 [Source:RGD Symbol;Acc:1304655]
Coordinates
chr11:60132549-60135216:+
Coord C1 exon
chr11:60132549-60132665
Coord A exon
chr11:60133511-60133682
Coord C2 exon
chr11:60134948-60135216
Length
172 bp
Sequences
Splice sites
3' ss Seq
TGACGCTTCCTCTCCTAAAGGCT
3' ss Score
6.95
5' ss Seq
CAGGTAGAA
5' ss Score
6.68
Exon sequences
Seq C1 exon
GCATCCCATGCACCAACAGGACCTTTAAATGTGGCAATGACATTTGCTTCAGAAAGCAAAATGCCCAATGCGATGGTATAGTGGACTGTCCAGACAGAAGTGACGAGGAGGGCTGCG
Seq A exon
GCTGTAGCAGAAGTTCTCCCTTCCTTCACCGCGTCGTTGGGGGTTCCGATTCCCAGGAGGGAACCTGGCCATGGCAGGTCAGCCTCCACTTTGTTGGATCAGCCCACTGTGGTGCCTCAGTCATCTCCAGAGAGTGGCTTCTCTCTGCAGCCCACTGTTTCCACGGAAACAG
Seq C2 exon
GCTGTCCGACCCCACCCCATGGACTGCTCACCTTGGGATGTACGTGCAGGGGAACGCCAAGTTTGTCTCTCCAGTAAGAAGGATTGTGGTCCACGAATACTACAACAGCCAGACTTTTGATTATGACATTGCTTTGCTGCAGCTCAGCATAGCCTGGCCTGAAACCCTGAGACAGCTCATTCAACCTATATGTATTCCTCCAGTTGGCCAGAGAGTGCGCAGTGGGGAGAAGTGCTGGGTGACGGGCTGGGGGCGAAGGCATGAAGCAG
VastDB Features
Vast-tools module Information
Secondary ID
ENSRNOG00000002145-'24-24,'24-23,25-24=AN
Average complexity
A_S
Mappability confidence:
100%=100=100%
Protein Impact
ORF disruption upon sequence exclusion
No structure available
Features
Disorder rate (Iupred):
C1=0.000 A=0.000 C2=0.000
Domain overlap (PFAM):
C1:
PF0005713=Ldl_recept_a=WD(100=92.5)
A:
PF0008921=Trypsin=PU(20.0=79.3)
C2:
PF0008921=Trypsin=FE(39.1=100)
Main Skipping Isoform:
NA
Other Inclusion Isoforms:
NA
Other Skipping Isoforms:
NA
Associated events
Conservation
Mouse
(mm9)
No conservation detected
Fruitfly
(dm6)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
CCATGCACCAACAGGACCTTT
R:
GAGCTGCAGCAAAGCAATGTC
Band lengths:
257-429
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]