HsaEX6060778 @ hg38
Exon Skipping
Gene
ENSG00000044459 | CNTLN
Description
centlein [Source:HGNC Symbol;Acc:HGNC:23432]
Coordinates
chr9:17309058-17332730:+
Coord C1 exon
chr9:17309058-17309252
Coord A exon
chr9:17330632-17330808
Coord C2 exon
chr9:17332605-17332730
Length
177 bp
Sequences
Splice sites
3' ss Seq
AATTATACTTTTTAAAATAGGTA
3' ss Score
6.48
5' ss Seq
AAGGTAGGG
5' ss Score
8.76
Exon sequences
Seq C1 exon
CTTTACAATGAGTTACATATTTGTTTTGAAACCACAAAATCAAATGAAGCTATGCTCCGGCAAAGTGTTACTAATCTTCAGGATCAGCTATTACAAAAAGAGCAAGAAAATGCTAAGTTAAAAGAAAAACTTCAGGAATCACAGGGAGCACCTCTTCCTTTACCTCAAGAAAGTGATCCAGACTACTCAGCACAG
Seq A exon
GTACCTCATCGCCCATCCTTATCAAGCTTAGAAACGTTAATGGTTTCACAGAAGTCTGAAATTGAGTATTTACAGGAGAAACTAAAGATAGCAAATGAAAAACTGTCAGAAAACATATCTGCCAACAAGGGTTTCTCCCGAAAGAGCATCATGACAAGTGCTGAAGGAAAACATAAG
Seq C2 exon
GAACCACCTGTGAAACGTTCAAGGTCTTTGTCCCCAAAGAGCTCTTTCACAGACTCAGAAGAGCTACAGAAGCTGAGAAAAGCTGAAAGAAAGATTGAAAACTTAGAGAAGGCACTACAACTAAAG
VastDB Features
Vast-tools module Information
Secondary ID
ENSG00000044459-'37-26,'37-25,40-26=AN
Average complexity
A_S
Mappability confidence:
100%=100=100%
Protein Impact
Alternative protein isoforms (Ref)
No structure available
Features
Disorder rate (Iupred):
C1=0.682 A=0.585 C2=0.808
Domain overlap (PFAM):
C1:
NO
A:
NO
C2:
NO
Main Skipping Isoform:
ENST00000380647fB1705
Other Inclusion Isoforms:
NA
Other Skipping Isoforms:
NA
Associated events
Other assemblies
Conservation
Chicken
(galGal4)
No conservation detected
Chicken
(galGal3)
No conservation detected
Zebrafish
(danRer10)
No conservation detected
Fruitfly
(dm6)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
CAAATGAAGCTATGCTCCGGC
R:
TCTTTCTTTCAGCTTTTCTCAGC
Band lengths:
249-426
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]
SPECIAL DATASETS
- Autistic and control brains